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rifcsplowo2_01_scaffold_860

Search features with annotation key words

Displaying items 1-30 of 84 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_860_1
Aciduliprofundum boonei, Aciduliprofundum, Euryarchaeota, Archaea

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1..1428
-----------------
DNA (1428bp)
protein (476aa)
tRNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=439481 species="Archaea; Euryarchaeota; Aciduliprofundum.;" source="Aciduliprofundum boone
tRNA-splicing ligase RtcB n=1 Tax=Aciduliprofundum boonei (strain DSM 19572 / T469) RepID=B5ID78_ACIB4 rbh
hypothetical protein
rifcsplowo2_01_scaffold_860_2
unknown

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1524..1958
-----------------
DNA (435bp)
protein (145aa)

This feature has no annotations

rifcsplowo2_01_scaffold_860_3
unknown

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1973..4048
-----------------
DNA (2076bp)
protein (692aa)

This feature has no annotations

rifcsplowo2_01_scaffold_860_4
R_WOR_2_48_11, WOR-2, Bacteria

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4270..5034
-----------------
DNA (765bp)
protein (255aa)
SPFH domain, Band 7 family protein Tax=RIFCSPHIGHO2_02_FULL_WOR_2_48_11_curated
Band 7 protein id=4358114 bin=GWF2_Lentisphaerae_50_93 species=unknown genus=Cyanothece taxon_order=Chroococcales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_Lentisphaerae_50_93 organism_group=Lentisphaerae organism_desc=gwf2_scaffold_392 has partial 16S
SPFH domain, Band 7 family protein
rifcsplowo2_01_scaffold_860_5
unknown

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5123..6682
-----------------
DNA (1560bp)
protein (520aa)

This feature has no annotations

rifcsplowo2_01_scaffold_860_6

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6905..7915
-----------------
DNA (1011bp)
protein (337aa)
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
large subunit ribosomal protein L3
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5241350 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_7

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8043..8639
-----------------
DNA (597bp)
protein (199aa)
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS11807.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
large subunit ribosomal protein L4e
LSU ribosomal protein l4p; K02930 large subunit ribosomal protein L4e id=5241351 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_8

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8651..9157
-----------------
DNA (507bp)
protein (169aa)
Large subunit ribosomal protein L23 {ECO:0000313|EMBL:KHO55754.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
large subunit ribosomal protein L23
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 id=5241352 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_9

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9159..9881
-----------------
DNA (723bp)
protein (241aa)
Large subunit ribosomal protein L2 {ECO:0000313|EMBL:KHO55755.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
large subunit ribosomal protein L2
LSU ribosomal protein l2p; K02886 large subunit ribosomal protein L2 id=5241353 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_10

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9897..10298
-----------------
DNA (402bp)
protein (134aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
small subunit ribosomal protein S19
30S ribosomal protein S19; K02965 small subunit ribosomal protein S19 id=5241354 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_11

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10303..10779
-----------------
DNA (477bp)
protein (159aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl22p; 50S ribosomal protein L22P; K02890 large subunit ribosomal protein L22 id=5241355 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L22P, large subunit ribosomal protein L22
rifcsplowo2_01_scaffold_860_12

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10790..11800
-----------------
DNA (1011bp)
protein (337aa)
Small subunit ribosomal protein S3 {ECO:0000313|EMBL:KHO55758.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
small subunit ribosomal protein S3
30S ribosomal protein S3; K02982 small subunit ribosomal protein S3 id=5241356 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_13

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11797..12048
-----------------
DNA (252bp)
protein (84aa)
50S ribosomal protein L29P {ECO:0000256|HAMAP-Rule:MF_00374}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
Ribosomal protein L29 id=5241357 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L29
rifcsplowo2_01_scaffold_860_14

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12048..12356
-----------------
DNA (309bp)
protein (103aa)
Protein translation factor SUI1 homolog {ECO:0000256|PIRNR:PIRNR037511}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
translation initiation factor 1
translation initiation factor 1 (eif-1/sui1); K03113 translation initiation factor 1 id=5241358 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_15

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12343..12645
-----------------
DNA (303bp)
protein (101aa)
Ribonuclease P protein component 1 {ECO:0000256|HAMAP-Rule:MF_00754}; Short=RNase P component 1 {ECO:0000256|HAMAP-Rule:MF_00754};; EC=3.1.26.5 {ECO:0000256|HAMAP-Rule:MF_00754};; Rpp29 {ECO:0000256|H
ribonuclease P protein subunit POP4 (EC:3.1.26.5)
ribonuclease P, Rpp29; K03538 ribonuclease P protein subunit POP4 [EC:3.1.26.5] id=5241359 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_16

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12650..13279
-----------------
DNA (630bp)
protein (210aa)
Small subunit ribosomal protein S17 {ECO:0000313|EMBL:KHO55762.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
small subunit ribosomal protein S17
30S ribosomal protein S17; K02961 small subunit ribosomal protein S17 id=5241360 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_17

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13276..13674
-----------------
DNA (399bp)
protein (133aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L14, large subunit ribosomal protein L14
rpl14p; 50S ribosomal protein L14; K02874 large subunit ribosomal protein L14 id=5241361 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_18

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13685..14041
-----------------
DNA (357bp)
protein (119aa)
50S ribosomal protein L24P n=1 Tax=Methanobacterium sp. Maddingley MBC34 RepID=K6TMJ9_9EURY
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
large subunit ribosomal protein L24
rifcsplowo2_01_scaffold_860_19

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14046..14768
-----------------
DNA (723bp)
protein (241aa)
30S ribosomal protein S4e {ECO:0000256|HAMAP-Rule:MF_00485}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
small subunit ribosomal protein S4e
30S ribosomal protein S4; K02987 small subunit ribosomal protein S4e id=5241363 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_20

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14794..15291
-----------------
DNA (498bp)
protein (166aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
large subunit ribosomal protein L5
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5241364 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_21

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15288..15437
-----------------
DNA (150bp)
protein (50aa)
30S ribosomal protein S14 type Z n=2 Tax=unclassified Thermoplasmatales RepID=M7T866_9EURY
Uncharacterized protein {ECO:0000313|EMBL:KHO55767.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
30S ribosomal protein S14P
rifcsplowo2_01_scaffold_860_22

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15449..15841
-----------------
DNA (393bp)
protein (131aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8, small subunit ribosomal protein S8
rps8p; 30S ribosomal protein S8; K02994 small subunit ribosomal protein S8 id=5241366 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_23

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15853..16371
-----------------
DNA (519bp)
protein (173aa)
50S ribosomal protein L6 n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RE50_ARCPA
Large subunit ribosomal protein L6 {ECO:0000313|EMBL:KHO55769.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
50S ribosomal protein L6
rifcsplowo2_01_scaffold_860_24

Not on your lists

16376..17116
-----------------
DNA (741bp)
protein (247aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO55770.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
large subunit ribosomal protein L32e
50S ribosomal protein L32e; K02912 large subunit ribosomal protein L32e id=5241368 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_25

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17136..17573
-----------------
DNA (438bp)
protein (146aa)
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rpl19e; 50S ribosomal protein L19e; K02885 large subunit ribosomal protein L19e id=5241369 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
50S ribosomal protein L19e, large subunit ribosomal protein L19e
rifcsplowo2_01_scaffold_860_26

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17574..18164
-----------------
DNA (591bp)
protein (197aa)
50S ribosomal protein L18P n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZD8_METFV
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L18
rifcsplowo2_01_scaffold_860_27

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18178..18909
-----------------
DNA (732bp)
protein (244aa)
Small subunit ribosomal protein S5 {ECO:0000313|EMBL:KHO55773.1}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
30S ribosomal protein S5, small subunit ribosomal protein S5
rps5p; 30S ribosomal protein S5; K02988 small subunit ribosomal protein S5 id=5241371 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_28

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18915..19376
-----------------
DNA (462bp)
protein (154aa)
50S ribosomal protein L30P n=1 Tax=Methanocaldococcus fervens (strain DSM 4213 / JCM 157852 / AG86) RepID=C7P7G2_METFA
50S ribosomal protein L30P {ECO:0000256|HAMAP-Rule:MF_01371, ECO:0000256|SAAS:SAAS00081760}; TaxID=1579379 species="Archaea.;" source="archaeon GW2011_AR21.;"
rpl30p; 50S ribosomal protein L30
rifcsplowo2_01_scaffold_860_29

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19379..19900
-----------------
DNA (522bp)
protein (174aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L15, large subunit ribosomal protein L15
rpl15p; 50S ribosomal protein L15; K02876 large subunit ribosomal protein L15 id=5241373 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_860_30

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19897..21258
-----------------
DNA (1362bp)
protein (454aa)
preprotein translocase subunit SecY
preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5241374 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Protein translocase subunit SecY {ECO:0000256|HAMAP-Rule:MF_01465, ECO:0000256|RuleBase:RU000537}; Protein transport protein SEC61 subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01465}; TaxID=157937
Displaying items 1-30 of 84 in total

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