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rifcsplowo2_01_scaffold_15394

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Displaying 21 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_15394_1
unknown

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comp(2..214)
DNA (213bp) protein (71aa)

This feature has no annotations

rifcsplowo2_01_scaffold_15394_2
unknown

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312..734
DNA (423bp) protein (141aa)

This feature has no annotations

rifcsplowo2_01_scaffold_15394_3
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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comp(727..909)
DNA (183bp) protein (61aa)
Transcription elongation factor Spt4 n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VNL3_9EURY
Transcription elongation factor Spt4 {ECO:0000256|HAMAP-Rule:MF_00949}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-5
DNA-directed RNA polymerase, subunit E
rifcsplowo2_01_scaffold_15394_4
unknown

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comp(906..1469)
DNA (564bp) protein (188aa)
DNA-directed RNA polymerase subunit E n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VV26_9EURY id=5103653 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase subunit E n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VV26_9EURY Tax=AR20
DNA-directed RNA polymerase subunit E
rifcsplowo2_01_scaffold_15394_5
unknown

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comp(1474..1833)
DNA (360bp) protein (120aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PM40_9ZZZZ id=5103652 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PM40_9ZZZZ Tax=AR20
hypothetical protein
rifcsplowo2_01_scaffold_15394_6

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2052..3776
DNA (1725bp) protein (575aa)
gyrB; DNA gyrase subunit B; K02470 DNA gyrase subunit B [EC:5.99.1.3] id=5049726 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|RuleBase:RU003363};; TaxID=1579376 species="Archaea.;"
DNA gyrase subunit B
rifcsplowo2_01_scaffold_15394_7
Mycoplasma canis, Mycoplasma, Mycoplasmatales, Mollicutes, Tenericutes, Bacteria

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3746..3928
DNA (183bp) protein (61aa)
DNA gyrase subunit B {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|SAAS:SAAS00228809}; EC=5.99.1.3 {ECO:0000256|HAMAP-Rule:MF_01898, ECO:0000256|SAAS:SAAS00048832};; TaxID=1131455 species="Bacteria; T
MCYN0710; DNA gyrase, B subunit (EC:5.99.1.3)
DNA gyrase subunit B n=1 Tax=Mycoplasma canis UFG4 RepID=I1A6P4_9MOLU
rifcsplowo2_01_scaffold_15394_8
AR18, Woesearchaeaota, DPANN, Archaea

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3930..6425
DNA (2496bp) protein (832aa)
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] id=5049727 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] Tax=AR18
DNA gyrase subunit A
rifcsplowo2_01_scaffold_15394_9

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comp(6391..7518)
DNA (1128bp) protein (376aa)
Uncharacterized protein {ECO:0000313|EMBL:KKN53900.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein id=8267058 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Aminicenantes tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
hypothetical protein
rifcsplowo2_01_scaffold_15394_10
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(7653..7871)
DNA (219bp) protein (73aa)
hypothetical protein; K14415 tRNA-splicing ligase RtcB [EC:6.5.1.3] Tax=CG_Pacearch_04
tRNA-splicing ligase RtcB n=1 Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B72897
hypothetical protein
rifcsplowo2_01_scaffold_15394_11
AR19, Pacearchaeaota, DPANN, Archaea

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comp(7914..8327)
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=unclassified Aminicenantes RepID=UPI000374DB56
archease family protein Tax=AR19
hypothetical protein
rifcsplowo2_01_scaffold_15394_12
unknown

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8408..8722
DNA (315bp) protein (105aa)

This feature has no annotations

rifcsplowo2_01_scaffold_15394_13

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8786..9418
DNA (633bp) protein (211aa)
small GTP-binding protein; K06883 id=5045267 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54474.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
Small GTP-binding protein
rifcsplowo2_01_scaffold_15394_14
AR17, Woesearchaeaota, DPANN, Archaea

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9434..9820
DNA (387bp) protein (129aa)
Uncharacterized protein n=2 Tax=Methanothermobacter RepID=D9PV24_METTM id=5103011 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
hypothetical protein Tax=AR17
rifcsplowo2_01_scaffold_15394_15
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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9820..10197
DNA (378bp) protein (126aa)
Zn-ribbon containing protein Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein; K07163 id=5045269 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Zn-ribbon containing protein
rifcsplowo2_01_scaffold_15394_16
unknown

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10258..10941
DNA (684bp) protein (228aa)

This feature has no annotations

rifcsplowo2_01_scaffold_15394_17

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comp(10938..11483)
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YJ45_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD37157.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
phosphatidylethanolamine-binding protein
rifcsplowo2_01_scaffold_15394_18
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(11605..13464)
DNA (1860bp) protein (620aa)
ERCC2/XPD/Rad3-related DNA repair helicase; K10844 DNA excision repair protein ERCC-2 [EC:3.6.4.12] id=5045763 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA repair helicase rad3 Tax=CG_Woesearch_02
ATP dependent helicase
rifcsplowo2_01_scaffold_15394_19
CG_Woesearch_02, Woesearchaeota, Archaea

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13591..14091
DNA (501bp) protein (167aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003667A1E
id=5800315 Tax=CG_Woesearch_02
rifcsplowo2_01_scaffold_15394_20

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comp(14071..14283)
DNA (213bp) protein (71aa)
Marine sediment metagenome DNA, contig: S01H1_S34607 {ECO:0000313|EMBL:GAG32323.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsplowo2_01_scaffold_15394_21
unknown

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comp(14345..14644)
DNA (300bp) protein (100aa)

This feature has no annotations

Displaying 21 items

View Taxonomy
NameRatio
unknown
33.33%
marine sediment metagenome
9.52%
archaeon GW2011_AR18
9.52%
CG_Woesearch_02
9.52%
uncultured bacterium
4.76%
Thermoplasmatales archaeon SCGC AB-539-C06
4.76%
RBG_13_Woesearchaeota_36_6_curated
4.76%
Mycoplasma canis
4.76%
CG_Pacearch_04
4.76%
AR19
4.76%
AR18
4.76%
AR17
4.76%
unknown: 0.3333333333333333CG_Woesearch_02: 0.09523809523809523archaeon GW2011_AR18: 0.09523809523809523marine sediment metagenome: 0.09523809523809523AR17: 0.047619047619047616AR18: 0.047619047619047616AR19: 0.047619047619047616CG_Pacearch_04: 0.047619047619047616Mycoplasma canis: 0.047619047619047616RBG_13_Woesearchaeota_36_6_curated: 0.047619047619047616Thermoplasmatales archaeon SCGC AB-539-C06: 0.047619047619047616uncultured bacterium: 0.047619047619047616unknownCG_Woesearch_02archaeon GW2011_AR18marine sediment metagenome