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rifcsplowo2_01_scaffold_18246

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_18246_1
CG_Pacearch_02, Pacearchaeota, Archaea

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67..909
DNA (843bp) protein (281aa)
tyrosine recombinase n=1 Tax=Aquimarina agarilytica RepID=UPI0002881B87
site-specific recombinase XerD Tax=CG_Pacearch_02
integrase family protein
rifcsplowo2_01_scaffold_18246_2

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comp(906..1892)
DNA (987bp) protein (329aa)
Probable tRNA pseudouridine synthase B {ECO:0000256|HAMAP-Rule:MF_01081}; EC=5.4.99.25 {ECO:0000256|HAMAP-Rule:MF_01081};; tRNA pseudouridine(55) synthase {ECO:0000256|HAMAP-Rule:MF_01081}; tRNA pseud
Probable tRNA pseudouridine synthase B n=13 Tax=Thermococcaceae RepID=TRUB_PYRFU id=5103295 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
putative tRNA pseudouridine synthase B
rifcsplowo2_01_scaffold_18246_3
unknown

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comp(1923..2408)
DNA (486bp) protein (162aa)
Ribosomal protein L31e n=1 Tax=uncultured marine crenarchaeote AD1000-325-A12 RepID=B3V5Q9_9ARCH id=5103296 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Ribosomal protein L31e n=1 Tax=uncultured marine crenarchaeote AD1000-325-A12 RepID=B3V5Q9_9ARCH Tax=AR20
Ribosomal protein L31e
rifcsplowo2_01_scaffold_18246_4
AR15, Woesearchaeaota, DPANN, Archaea

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comp(2411..2581)
DNA (171bp) protein (57aa)
hypothetical protein
id=5800694 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Tax=AR15
rifcsplowo2_01_scaffold_18246_5

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comp(2572..2871)
DNA (300bp) protein (100aa)
hypothetical protein
DNA-binding protein; K06875 programmed cell death protein 5 id=5049180 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Programmed cell death protein 5 {ECO:0000313|EMBL:KHO49759.1}; TaxID=1579368 species="Archaea.;" source="archaeon GW2011_AR6.;"
rifcsplowo2_01_scaffold_18246_6
unknown

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comp(2868..3278)
DNA (411bp) protein (137aa)
30S ribosomal protein S19e n=4 Tax=Methanocaldococcus RepID=RS19E_METJA id=5103299 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S19e n=4 Tax=Methanocaldococcus RepID=RS19E_METJA Tax=AR20
30S ribosomal protein S19e
rifcsplowo2_01_scaffold_18246_7
R_OD1_Uhrbacteria_57_19, Uhrbacteria, Parcubacteria, Bacteria

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3545..5725
DNA (2181bp) protein (727aa)
Myxococcales GC_trans_RRR domain protein n=1 Tax=Haliangium ochraceum (strain DSM 14365 / JCM 11303 / SMP-2) RepID=D0LUD6_HALO1
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_OD1_Uhrbacteria_57_19_curated
hypothetical protein
rifcsplowo2_01_scaffold_18246_8
Pyrococcus sp. ST04, Pyrococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(6222..8015)
DNA (1794bp) protein (598aa)
Uncharacterized protein n=1 Tax=Pyrococcus sp. ST04 RepID=I3RFC3_9EURY rbh
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK22933.1}; TaxID=1183377 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus.;" source="Pyrococcus sp. ST04.;"
rifcsplowo2_01_scaffold_18246_9
AR18, Woesearchaeaota, DPANN, Archaea

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comp(8048..8590)
DNA (543bp) protein (181aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037A9583
Tax=AR18
rifcsplowo2_01_scaffold_18246_10

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8937..9764
DNA (828bp) protein (276aa)
Valyl-tRNA synthetase {ECO:0000313|EMBL:KHO48284.1}; EC=6.1.1.9 {ECO:0000313|EMBL:KHO48284.1};; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
valS; valine--tRNA ligase (EC:6.1.1.9)
Suspect SCG annotation. See neighboring gene [rifcsplowo2_01_scaffold_18246_11].
Valyl-tRNA synthetase id=3688780 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsplowo2_01_scaffold_18246_11
AR5, Aenigmarchaeota, DPANN, Archaea

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9754..11187
DNA (1434bp) protein (478aa)
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=AR5
valS; valyl-tRNA synthetase; K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=5044349 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
valS; valyl-tRNA synthetase
rifcsplowo2_01_scaffold_18246_12
AR17, Woesearchaeaota, DPANN, Archaea

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11223..12704
DNA (1482bp) protein (494aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003774E83
Peptide chain release factor subunit 1 Tax=AR17
Peptide chain release factor subunit 1
rifcsplowo2_01_scaffold_18246_13
unknown

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comp(12729..13052)
DNA (324bp) protein (108aa)

This feature has no annotations

rifcsplowo2_01_scaffold_18246_14

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13389..14030
DNA (642bp) protein (214aa)
Segregation and condensation protein B {ECO:0000313|EMBL:KHO52779.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
segregation and condensation protein B; K06024 segregation and condensation protein B id=5044965 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Segregation and condensation protein B
rifcsplowo2_01_scaffold_18246_15
unknown

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13981..14100
DNA (120bp) protein (40aa)

This feature has no annotations

Displaying 15 items

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