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rifcsplowo2_01_scaffold_2452

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_2452_1
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(108..362)
DNA (255bp) protein (85aa)
Tax=CG_Pacearch_03
rifcsplowo2_01_scaffold_2452_2
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(385..1038)
DNA (654bp) protein (218aa)
Tax=CG_Pacearch_03
rifcsplowo2_01_scaffold_2452_3
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

comp(1159..1824)
DNA (666bp) protein (222aa)
Marine sediment metagenome DNA, contig: S03H2_L02208 Tax=CG_Pacearch_02
rifcsplowo2_01_scaffold_2452_4
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(1818..3056)
DNA (1239bp) protein (413aa)
icaA; N-glycosyltransferase; K11936 biofilm PGA synthesis N-glycosyltransferase PgaC [EC:2.4.-.-] Tax=CG_Pacearch_03
Glycosyltransferase involved in cell wall biogenesis n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QGH0_9EURY id=5103318 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Glycosyltransferase involved in cell wall biogenesis
rifcsplowo2_01_scaffold_2452_5
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(3066..3707)
DNA (642bp) protein (214aa)
hypothetical protein; K06024 segregation and condensation protein B Tax=CG_Pacearch_06
segregation and condensation protein B; K06024 segregation and condensation protein B id=5044965 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Segregation and condensation protein B
rifcsplowo2_01_scaffold_2452_6
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(3744..4340)
DNA (597bp) protein (199aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00035C5E5E
hypothetical protein; K06384 stage II sporulation protein M Tax=CG_Pacearch_06
integral membrane protein
rifcsplowo2_01_scaffold_2452_7
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(4444..5103)
DNA (660bp) protein (220aa)
Uncharacterized protein n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W3W6_UNCMA
rhomboid family protein Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsplowo2_01_scaffold_2452_8
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(5105..5824)
DNA (720bp) protein (240aa)
Transcription factor E n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HND9_PYRSN id=5102919 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
transcription initiation factor E subunit alpha; K03136 transcription initiation factor TFIIE subunit alpha Tax=CG_Pacearch_06
Transcription factor E
rifcsplowo2_01_scaffold_2452_9
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

5924..6382
DNA (459bp) protein (153aa)
vmp22; metalloproteinase, extracellular matrix glycoprotein VMP22 Tax=CG_Pacearch_02
id=5102918 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsplowo2_01_scaffold_2452_10
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

6494..6883
DNA (390bp) protein (130aa)
Tax=CG_Pacearch_06
rifcsplowo2_01_scaffold_2452_11
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

6955..7413
DNA (459bp) protein (153aa)
DNA polymerase beta domain-containing protein; K07075 id=5041690 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA polymerase beta domain-containing protein; K07075 Tax=AR4
DNA polymerase beta domain-containing protein
rifcsplowo2_01_scaffold_2452_12
AR13, Pacearchaeaota, DPANN, Archaea

Not on your lists

7413..7760
DNA (348bp) protein (116aa)
UPF0331 protein MA_1296 n=1 Tax=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) RepID=Y1296_METAC
hypothetical protein
Putative uncharacterized protein Tax=AR13
rifcsplowo2_01_scaffold_2452_13
CG_Pacearch_05, Pacearchaeota, Archaea

Not on your lists


7834..9618
DNA (1785bp) protein (595aa)
alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=CG_Pacearch_05
alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7] id=5094124 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Alanine-tRNA ligase
rifcsplowo2_01_scaffold_2452_14
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

9679..9900
DNA (222bp) protein (74aa)
Uncharacterized protein Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_01_scaffold_2452_15
AR9, Woesearchaeaota, DPANN, Archaea

Not on your lists

9893..10255
DNA (363bp) protein (121aa)
PIN domain-containing protein Tax=AR9
PIN protein
PIN domain-containing protein id=5241434 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_2452_16
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

10752..11930
DNA (1179bp) protein (393aa)
Uncharacterized protein n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1Z0X3_METPS id=5103071 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsplowo2_01_scaffold_2452_17
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists


comp(11933..14422)
DNA (2490bp) protein (830aa)
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RBG_13_Pacearchaeota_36_9_curated
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] id=5049673 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Leucine-tRNA ligase
rifcsplowo2_01_scaffold_2452_18

Not on your lists

comp(14464..14844)
DNA (381bp) protein (127aa)
PIN protein
PIN domain-containing protein id=5241434 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
PIN protein {ECO:0000313|EMBL:AJF60425.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsplowo2_01_scaffold_2452_19

Not on your lists

comp(14832..15074)
DNA (243bp) protein (81aa)
hypothetical protein
AbrB/MazE/MraZ-like id=5241435 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Uncharacterized protein {ECO:0000313|EMBL:AJF60426.1}; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsplowo2_01_scaffold_2452_20
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

comp(15130..15495)
DNA (366bp) protein (122aa)
translation initiation factor IF-1; K03236 translation initiation factor 1A Tax=CG_Pacearch_02
Translation initiation factor 1A id=5800615 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Translation initiation factor 1A
rifcsplowo2_01_scaffold_2452_21
unknown

Not on your lists

comp(15697..15837)
DNA (141bp) protein (47aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2452_22
GWA2_RIF01_43_8_curated, RIF1, Bacteria

Not on your lists

15981..16541
DNA (561bp) protein (187aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037D7568
hypothetical protein Tax=GWA2_RIF01_43_8_curated
rifcsplowo2_01_scaffold_2452_23
unknown

Not on your lists

16574..17464
DNA (891bp) protein (297aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2452_24
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

17845..18654
DNA (810bp) protein (270aa)
CDP-4-dehydro-6-deoxy-D-gulose 4-reductase Tax=CG_Pacearch_06
cell division inhibitor; K03609 septum site-determining protein MinD id=5045746 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
cell division inhibitor minD - like protein
rifcsplowo2_01_scaffold_2452_25
CG_Pacearch_02, Pacearchaeota, Archaea

Not on your lists

18698..19063
DNA (366bp) protein (122aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 10-1 RepID=R9MN11_9FIRM
histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=CG_Pacearch_02
histidine triad (HIT) protein
rifcsplowo2_01_scaffold_2452_26
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(19212..19556)
DNA (345bp) protein (115aa)
DNA-binding protein Alba; K03622 archaea-specific DNA-binding protein Tax=RBG_13_Pacearchaeota_36_9_curated
DNA/RNA-binding protein Alba; K03622 archaea-specific DNA-binding protein id=5043654 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA/RNA-binding protein Alba
rifcsplowo2_01_scaffold_2452_27
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(19516..19740)
DNA (225bp) protein (75aa)
Marine sediment metagenome DNA, contig: S03H2_S02065 Tax=CG_Pacearch_06
rifcsplowo2_01_scaffold_2452_28
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

comp(19820..20665)
DNA (846bp) protein (282aa)
hypothetical protein
id=5103053 Tax=CG_Pacearch_03
id=5103053 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsplowo2_01_scaffold_2452_29
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(20708..21205)
DNA (498bp) protein (166aa)
tRNA-splicing endonuclease subunit alpha; K01170 tRNA-intron endonuclease, archaea type [EC:3.1.27.9] Tax=CG_Pacearch_06
tRNA-intron endonuclease n=1 Tax=Candidatus Parvarchaeum acidiphilum ARMAN-4 RepID=D2EE73_9EURY id=5103054 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
tRNA-intron endonuclease
rifcsplowo2_01_scaffold_2452_30

Not on your lists


comp(21283..22776)
DNA (1494bp) protein (498aa)
glycyl-tRNA synthetase (EC:6.1.1.14)
Uncharacterized protein {ECO:0000313|EMBL:KHO48738.1}; TaxID=1579364 species="Archaea.;" source="archaeon GW2011_AR1.;"
Glycyl-tRNA synthetase id=5799897 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Displaying items 1-30 of 48 in total

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