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rifcsplowo2_01_scaffold_8611

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_8611_1

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comp(3..224)
DNA (222bp) protein (74aa)
50S ribosomal protein L14; K02875 large subunit ribosomal protein L14e id=5042328 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Large subunit ribosomal protein L14e {ECO:0000313|EMBL:KHO46826.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
ribosomal protein L14
rifcsplowo2_01_scaffold_8611_2
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(282..548)
DNA (267bp) protein (89aa)
50S ribosomal protein L34e n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZE5_METFV
50S ribosomal protein L34e
50S ribosomal protein L34e {ECO:0000256|HAMAP-Rule:MF_00349}; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" source="Methanothe
rifcsplowo2_01_scaffold_8611_3

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comp(558..1301)
DNA (744bp) protein (248aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO51237.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Putative uncharacterized protein id=5042325 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_8611_4

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comp(1304..2728)
DNA (1425bp) protein (475aa)
Protein translocase subunit SecY {ECO:0000256|RuleBase:RU000537}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
SecY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5041782 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein translocase subunit SecY
rifcsplowo2_01_scaffold_8611_5

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comp(2739..3083)
DNA (345bp) protein (115aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=5042323 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L15
rifcsplowo2_01_scaffold_8611_6
AR11, Woesearchaeaota, DPANN, Archaea

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comp(3193..3534)
DNA (342bp) protein (114aa)
50S ribosomal protein L30P n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL30_NANEQ
ribosomal protein L30P; K02907 large subunit ribosomal protein L30 Tax=AR11
rpl30p; 50S ribosomal protein L30P
rifcsplowo2_01_scaffold_8611_7
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(3572..4396)
DNA (825bp) protein (275aa)
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 Tax=CG_Woesearch_02
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5042321 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S5
rifcsplowo2_01_scaffold_8611_8

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comp(4393..4968)
DNA (576bp) protein (192aa)
50S ribosomal protein L18P n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL18_NANEQ
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl18p; 50S ribosomal protein L18P
rifcsplowo2_01_scaffold_8611_9

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comp(4958..5401)
DNA (444bp) protein (148aa)
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
50S ribosomal protein L19e id=5800045 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rpl19e; 50S ribosomal protein L19
rifcsplowo2_01_scaffold_8611_10
AR11, Woesearchaeaota, DPANN, Archaea

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comp(5418..5984)
DNA (567bp) protein (189aa)
ribosomal protein L32e; K02912 large subunit ribosomal protein L32e Tax=AR11
50S ribosomal protein L32e; K02912 large subunit ribosomal protein L32e id=5041776 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
ribosomal protein L32e
rifcsplowo2_01_scaffold_8611_11

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comp(5981..6559)
DNA (579bp) protein (193aa)
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12291.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl6p; 50S ribosomal protein L6; K02933 large subunit ribosomal protein L6 id=5042317 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L6
rifcsplowo2_01_scaffold_8611_12

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comp(6550..6942)
DNA (393bp) protein (131aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=5042316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S8
rifcsplowo2_01_scaffold_8611_13

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comp(6951..7181)
DNA (231bp) protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5042315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46813.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
SSU ribosomal protein S14P
rifcsplowo2_01_scaffold_8611_14

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comp(7178..7690)
DNA (513bp) protein (171aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
rifcsplowo2_01_scaffold_8611_15
AR11, Woesearchaeaota, DPANN, Archaea

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comp(7692..8384)
DNA (693bp) protein (231aa)
SSU ribosomal protein s4e; K02987 small subunit ribosomal protein S4e Tax=AR11
30S ribosomal protein S4E; K02987 small subunit ribosomal protein S4e id=5042313 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S4
rifcsplowo2_01_scaffold_8611_16

Not on your lists


comp(8381..8788)
DNA (408bp) protein (136aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24
rifcsplowo2_01_scaffold_8611_17

Not on your lists


comp(8790..9191)
DNA (402bp) protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 id=5042311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
rifcsplowo2_01_scaffold_8611_18

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comp(9188..9619)
DNA (432bp) protein (144aa)
30S ribosomal protein S17P n=2 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RS17_METKA
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12347.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rps17p; 30S ribosomal protein S17
rifcsplowo2_01_scaffold_8611_19
unknown

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comp(9624..9890)
DNA (267bp) protein (89aa)

This feature has no annotations

rifcsplowo2_01_scaffold_8611_20
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(9880..10188)
DNA (309bp) protein (103aa)
translation initiation factor 1 (eif-1/sui1); K03113 translation initiation factor 1 Tax=RBG_13_Woesearchaeota_36_6_curated
translation initiation factor 1 (eIF-1/SUI1); K03113 translation initiation factor 1 id=5042308 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
translation initiation factor 1 (eif-1/sui1)
rifcsplowo2_01_scaffold_8611_21
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(10185..10382)
DNA (198bp) protein (66aa)
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 Tax=CG_Woesearch_02
50S ribosomal protein L29; K02904 large subunit ribosomal protein L29 id=5042307 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L29
rifcsplowo2_01_scaffold_8611_22

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comp(10351..11100)
DNA (750bp) protein (250aa)
30S ribosomal protein S3 n=1 Tax=uncultured organism RepID=U3GQK3_9ZZZZ
30S ribosomal protein S3 {ECO:0000256|HAMAP-Rule:MF_01309}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S3
rifcsplowo2_01_scaffold_8611_23

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comp(11097..11612)
DNA (516bp) protein (172aa)
50S ribosomal protein L22 {ECO:0000256|RuleBase:RU004007}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L22; K02890 large subunit ribosomal protein L22 id=5042305 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L22
rifcsplowo2_01_scaffold_8611_24

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comp(11613..11990)
DNA (378bp) protein (126aa)
30S ribosomal protein S19P {ECO:0000256|HAMAP-Rule:MF_00531}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S19 id=5800060 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S19
rifcsplowo2_01_scaffold_8611_25

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comp(12000..12584)
DNA (585bp) protein (195aa)
50S ribosomal protein L2 {ECO:0000256|HAMAP-Rule:MF_01320, ECO:0000256|SAAS:SAAS00010821}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L2; K02886 large subunit ribosomal protein L2 id=5042303 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl2p; 50S ribosomal protein L2
rifcsplowo2_01_scaffold_8611_26
AR11, Woesearchaeaota, DPANN, Archaea

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comp(12721..13005)
DNA (285bp) protein (95aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003624D48
50S ribosomal protein L23; K02892 large subunit ribosomal protein L23 Tax=AR11
50S ribosomal protein L23P
rifcsplowo2_01_scaffold_8611_27

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comp(13002..13811)
DNA (810bp) protein (270aa)
50S ribosomal protein L4P {ECO:0000313|EMBL:AJS12487.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl4lp; 50S ribosomal protein L4P; K02930 large subunit ribosomal protein L4e id=5042301 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L4
rifcsplowo2_01_scaffold_8611_28

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comp(13813..14763)
DNA (951bp) protein (317aa)
50S ribosomal protein L3 {ECO:0000256|SAAS:SAAS00023038}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L3; K02906 large subunit ribosomal protein L3 id=5042300 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
LSU ribosomal protein L3e (L3p)
Displaying 28 items

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