ggKbase home page

rifcsplowo2_01_scaffold_10105

Search features with annotation key words

Displaying 14 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_10105_1
unknown

Not on your lists

423..956
-----------------
DNA (534bp)
protein (178aa)

This feature has no annotations

rifcsplowo2_01_scaffold_10105_2
Thermoplasmatales archaeon SCGC AB-540-F20, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

1012..2250
-----------------
DNA (1239bp)
protein (413aa)
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.
purA; adenylosuccinate synthetase (EC:6.3.4.4)
Adenylosuccinate synthetase n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7U093_9EURY
rifcsplowo2_01_scaffold_10105_3
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(2313..2759)
-----------------
DNA (447bp)
protein (149aa)
Putative transcription termination factor NusA n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=F9VMS0_SULTO
NusA family protein; K02600 N utilization substance protein A Tax=CG_Micra_05
nusA; transcription elongation factor NusA-like protein
rifcsplowo2_01_scaffold_10105_4
CG_Micra_01, Micraarchaeota, Archaea

Not on your lists


comp(2764..3207)
-----------------
DNA (444bp)
protein (148aa)
50S ribosomal protein L30e n=1 Tax=Methanocaldococcus vulcanius (strain ATCC 700851 / DSM 12094 / M7) RepID=C9RDK6_METVM
50S ribosomal protein L30e
50S ribosomal protein L30; K02908 large subunit ribosomal protein L30e Tax=CG_Micra_01
rifcsplowo2_01_scaffold_10105_5

Not on your lists

comp(3218..4252)
-----------------
DNA (1035bp)
protein (345aa)
DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VXR0_9EURY
Marine sediment metagenome DNA, contig: S12H4_S06354 {ECO:0000313|EMBL:GAI95215.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
DNA-directed RNA polymerase, subunit A''
rifcsplowo2_01_scaffold_10105_6
CG_Micra_01, Micraarchaeota, Archaea

Not on your lists

comp(4262..6763)
-----------------
DNA (2502bp)
protein (834aa)
DNA-directed RNA polymerase subunit A'; K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] Tax=CG_Micra_01
DNA-directed RNA polymerase n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RIB4_ARCPA
DNA-directed RNA polymerase subunit A'
rifcsplowo2_01_scaffold_10105_7
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(6768..8585)
-----------------
DNA (1818bp)
protein (606aa)
DNA-directed RNA polymerase, subunit b' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] Tax=CG_Micra_05
DNA-directed RNA polymerase, subunit b' (EC:2.7.7.6)
DNA-directed RNA polymerase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYR9_METFV
rifcsplowo2_01_scaffold_10105_8
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(8582..10048)
-----------------
DNA (1467bp)
protein (489aa)
DNA-directed RNA polymerase; K03045 DNA-directed RNA polymerase subunit B" [EC:2.7.7.6] Tax=CG_Micra_05
DNA-directed RNA polymerase n=1 Tax=Methanotorris formicicus Mc-S-70 RepID=H1KXR9_9EURY
DNA-directed RNA polymerase subunit B
rifcsplowo2_01_scaffold_10105_9
Methanosarcina thermophila, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

comp(10067..10366)
-----------------
DNA (300bp)
protein (100aa)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; TaxID=523844 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales
RNA polymerase Rpb5 (EC:2.7.7.6)
DNA-directed RNA polymerase subunit H n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XQ11_METZD
rifcsplowo2_01_scaffold_10105_10
CG_Micra_01, Micraarchaeota, Archaea

Not on your lists

10553..11128
-----------------
DNA (576bp)
protein (192aa)
GMP synthase (EC:6.3.5.2); K01951 GMP synthase (glutamine-hydrolysing) [EC:6.3.5.2] Tax=CG_Micra_01
guaA-N; GMP synthase subunit A (EC:6.3.5.2)
GMP synthase [glutamine-hydrolyzing] subunit A n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=GUAAA_PYRAB
rifcsplowo2_01_scaffold_10105_11
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

Not on your lists

11160..11807
-----------------
DNA (648bp)
protein (216aa)
tRNA(Phe) 7-((3-amino-3-carboxypropyl)-4-demethylwyosine(37)-N(4))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00266}; EC=2.1.1.282 {ECO:0000256|HAMAP-Rule:MF_00266};; tRNA wyosine derivatives biosyn
Uncharacterized conserved protein n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=Q8TZ89_METKA
hypothetical protein
rifcsplowo2_01_scaffold_10105_12
Clostridium tetani, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11823..12782
-----------------
DNA (960bp)
protein (320aa)
Come-like protein, metallo beta-lactamase superfamily hydrolase n=1 Tax=Clostridium tetani (strain Massachusetts / E88) RepID=Q897B9_CLOTE
competence protein ComE
Come-like protein, metallo beta-lactamase superfamily hydrolase {ECO:0000313|EMBL:AAO35419.1}; TaxID=212717 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" sou
rifcsplowo2_01_scaffold_10105_13
unknown

Not on your lists

12772..13092
-----------------
DNA (321bp)
protein (107aa)

This feature has no annotations

rifcsplowo2_01_scaffold_10105_14
unknown

Not on your lists

13076..13450
-----------------
DNA (375bp)
protein (125aa)

This feature has no annotations

Displaying 14 items

View Taxonomy