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rifcsplowo2_01_scaffold_13340

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_13340_1
CG_Micra_05, Micraarchaeota, Archaea

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3..167
-----------------
DNA (165bp)
protein (55aa)
Uncharacterized protein n=1 Tax=Pyrococcus sp. (strain NA2) RepID=F4HLD2_PYRSN
rfc; replication factor C small subunit; K04801 replication factor C small subunit Tax=CG_Micra_05
putative replication factor C small subunit
rifcsplowo2_01_scaffold_13340_2
RBG_16_Deltaproteobacteria_44_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(179..1195)
-----------------
DNA (1017bp)
protein (339aa)
deoxyhypusine synthase-like protein (EC:1.5.1.-); K00809 deoxyhypusine synthase [EC:2.5.1.46] Tax=RBG_16_Deltaproteobacteria_44_11_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI000377E958
deoxyhypusine synthase-like protein
rifcsplowo2_01_scaffold_13340_3
R_Deltaproteobacteria_43_33, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1246..2673
-----------------
DNA (1428bp)
protein (476aa)
aspA; aspartate ammonia-lyase (EC:4.3.1.1)
Aspartate ammonia-lyase n=1 Tax=planctomycete KSU-1 RepID=I3INS7_9PLAN
aspartate ammonia-lyase Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_43_33_curated
rifcsplowo2_01_scaffold_13340_4
unknown

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2697..4373
-----------------
DNA (1677bp)
protein (559aa)

This feature has no annotations

rifcsplowo2_01_scaffold_13340_5
unknown

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comp(4382..5089)
-----------------
DNA (708bp)
protein (236aa)

This feature has no annotations

rifcsplowo2_01_scaffold_13340_6
R_OP11_Gottesmanbacteria_39_12, Gottesmanbacteria, Microgenomates, Bacteria

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comp(5114..5836)
-----------------
DNA (723bp)
protein (241aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OP11_Gottesmanbacteria_39_12_curated
hypothetical protein
rifcsplowo2_01_scaffold_13340_7
R_RIF_OD1_10_44_22b, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(5836..6981)
-----------------
DNA (1146bp)
protein (382aa)
Malic enzyme (EC:1.1.1.38) Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_10_44_22b_curated
malic enzyme (EC:1.1.1.38)
NAD-dependent malic enzyme 4 n=1 Tax=Caldibacillus debilis RepID=UPI000364E8A1
rifcsplowo2_01_scaffold_13340_8

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comp(6991..8445)
-----------------
DNA (1455bp)
protein (485aa)
Phosphoenolpyruvate carboxylase {ECO:0000256|HAMAP-Rule:MF_01904}; Short=PEPC {ECO:0000256|HAMAP-Rule:MF_01904};; Short=PEPCase {ECO:0000256|HAMAP-Rule:MF_01904};; EC=4.1.1.31 {ECO:0000256|HAMAP-Rule:
phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Phosphoenolpyruvate carboxylase id=5799881 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_13340_9
CG_Micra_05, Micraarchaeota, Archaea

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8657..9964
-----------------
DNA (1308bp)
protein (436aa)
phosphoesterase RecJ domain protein; K07463 archaea-specific RecJ-like exonuclease Tax=CG_Micra_05
recJ; archaea-specific RecJ-like protein exonuclease
recJ; ss-DNA-specific exonuclease; K07463 archaea-specific RecJ-like exonuclease id=5241514 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_13340_10
unknown

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10021..11553
-----------------
DNA (1533bp)
protein (511aa)

This feature has no annotations

rifcsplowo2_01_scaffold_13340_11
unknown

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comp(11858..12610)
-----------------
DNA (753bp)
protein (251aa)

This feature has no annotations

rifcsplowo2_01_scaffold_13340_12
CG_Micra_05, Micraarchaeota, Archaea

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12699..13679
-----------------
DNA (981bp)
protein (327aa)
RNA 3'-terminal-phosphate cyclase (EC:6.5.1.4); K01974 RNA 3'-terminal phosphate cyclase [EC:6.5.1.4] Tax=CG_Micra_05
RNA 3'-terminal-phosphate cyclase (EC:6.5.1.4)
RNA 3'-terminal phosphate cyclase n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RGX0_ARCPA
rifcsplowo2_01_scaffold_13340_13
CG_Micra_01, Micraarchaeota, Archaea

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comp(13763..14347)
-----------------
DNA (585bp)
protein (195aa)
Tax=CG_Micra_01
rifcsplowo2_01_scaffold_13340_14
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(14370..14702)
-----------------
DNA (333bp)
protein (111aa)
Nascent polypeptide-associated complex protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GX70_METFV
nascent polypeptide-associated complex protein; K03626 nascent polypeptide-associated complex subunit alpha Tax=CG_Micra_05
nascent polypeptide associated complex nac
rifcsplowo2_01_scaffold_13340_15
CG_Micra_06, Micraarchaeota, Archaea

Not on your lists


comp(14712..15299)
-----------------
DNA (588bp)
protein (196aa)
30S ribosomal protein S3Ae n=1 Tax=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) RepID=RS3A_SULTO
30S ribosomal protein S3Ae; K02984 small subunit ribosomal protein S3Ae Tax=CG_Micra_06
30S ribosomal protein S3
rifcsplowo2_01_scaffold_13340_16
Methanothermus fervidus, Methanothermus, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists


comp(15346..15597)
-----------------
DNA (252bp)
protein (84aa)
30S ribosomal protein S15 n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZH3_METFV
30S ribosomal protein S15
30S ribosomal protein S15 {ECO:0000256|HAMAP-Rule:MF_01343}; TaxID=523846 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanothermaceae; Methanothermus.;" source="Methanother
rifcsplowo2_01_scaffold_13340_17
CG_Micra_01, Micraarchaeota, Archaea

Not on your lists


comp(15850..16392)
-----------------
DNA (543bp)
protein (181aa)
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19] Tax=CG_Micra_01
Non-canonical purine NTP pyrophosphatase n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=NTPA_METKA
xanthosine triphosphate pyrophosphatase
rifcsplowo2_01_scaffold_13340_18
unknown

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16465..17199
-----------------
DNA (735bp)
protein (245aa)

This feature has no annotations

rifcsplowo2_01_scaffold_13340_19
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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17209..17964
-----------------
DNA (756bp)
protein (252aa)
Putative metallo-beta-lactamase n=1 Tax=Uncultured methanogenic archaeon RC-I RepID=Q0W4R6_UNCMA
putative metallo-beta-lactamase
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
rifcsplowo2_01_scaffold_13340_20
unknown

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comp(18138..19154)
-----------------
DNA (1017bp)
protein (339aa)

This feature has no annotations

rifcsplowo2_01_scaffold_13340_21
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(19194..19592)
-----------------
DNA (399bp)
protein (133aa)
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RQM3_LEAB4
methionine-r-sulfoxide reductase
rifcsplowo2_01_scaffold_13340_22
CG_Micra_05, Micraarchaeota, Archaea

Not on your lists

comp(19601..20557)
-----------------
DNA (957bp)
protein (319aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DI42_9EURY
Putative uncharacterized protein Tax=CG_Micra_05
rifcsplowo2_01_scaffold_13340_23
Thermoplasmatales archaeon SCGC AB-540-F20, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

Not on your lists

comp(20566..20832)
-----------------
DNA (267bp)
protein (89aa)
RNA polymerase dimerization; K03056 DNA-directed RNA polymerase subunit L [EC:2.7.7.6]
DNA-directed RNA polymerase, subunit L n=1 Tax=Thermoplasmatales archaeon SCGC AB-540-F20 RepID=M7TER4_9EURY
DNA-directed RNA polymerase, subunit L {ECO:0000313|EMBL:EMR75052.1}; TaxID=1242866 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-540
rifcsplowo2_01_scaffold_13340_24
CG_Micra_05, Micraarchaeota, Archaea

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20912..22132
-----------------
DNA (1221bp)
protein (407aa)
Putative uncharacterized protein n=1 Tax=Candidatus Micrarchaeum acidiphilum ARMAN-2 RepID=C7DIT5_9EURY
hypothetical protein Tax=CG_Micra_05
hypothetical protein
Displaying 24 items

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