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rifcsplowo2_01_scaffold_52783

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_52783_1

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comp(3..158)
-----------------
DNA (156bp)
protein (52aa)
50S ribosomal protein L18e n=2 Tax=Staphylothermus RepID=A3DMQ7_STAMF id=5103681 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L18e
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_52783_2
unknown

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comp(161..529)
-----------------
DNA (369bp)
protein (123aa)

This feature has no annotations

rifcsplowo2_01_scaffold_52783_3
AR18, Woesearchaeaota, DPANN, Archaea

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comp(671..1453)
-----------------
DNA (783bp)
protein (261aa)
RNA polymerase insert; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=AR18
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003621DCB
DNA-directed RNA polymerase subunit D
rifcsplowo2_01_scaffold_52783_4
AR18, Woesearchaeaota, DPANN, Archaea

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comp(1501..1899)
-----------------
DNA (399bp)
protein (133aa)
rps11p; 30S ribosomal protein S11P; K02948 small subunit ribosomal protein S11 id=5051521 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
rps11p; 30S ribosomal protein S11P; K02948 small subunit ribosomal protein S11 Tax=AR18
rps11p; 30S ribosomal protein S11P
rifcsplowo2_01_scaffold_52783_5
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(1892..2401)
-----------------
DNA (510bp)
protein (170aa)
30S ribosomal protein S4 n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BD43_METIK
30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000256|SAAS:SAAS00016650}; TaxID=880724 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanoto
rifcsplowo2_01_scaffold_52783_6

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comp(2361..2915)
-----------------
DNA (555bp)
protein (185aa)
30S ribosomal protein S13 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS13_NANEQ id=5103690 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S13
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_52783_7
AR18, Woesearchaeaota, DPANN, Archaea

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comp(2992..3540)
-----------------
DNA (549bp)
protein (183aa)
hypothetical protein; K07572 putative nucleotide binding protein id=5051518 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein; K07572 putative nucleotide binding protein Tax=AR18
DNA-binding protein
rifcsplowo2_01_scaffold_52783_8

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comp(3562..3885)
-----------------
DNA (324bp)
protein (108aa)
Conserved protein n=2 Tax=Methanothermobacter RepID=O27379_METTH id=5103693 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO52180.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
rifcsplowo2_01_scaffold_52783_9
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(3872..4177)
-----------------
DNA (306bp)
protein (102aa)
50S ribosomal protein L21; K02889 large subunit ribosomal protein L21e Tax=CG_Woesearch_02
50S ribosomal protein L21e; K02889 large subunit ribosomal protein L21e id=5051516 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
50S ribosomal protein L21e
rifcsplowo2_01_scaffold_52783_10
R_OP11_Woesebacteria_38_26, Woesebacteria, Microgenomates, Bacteria

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4249..6135
-----------------
DNA (1887bp)
protein (629aa)
Fibronectin type III domain-containing protein n=1 Tax=Methylomicrobium album BG8 RepID=H8GIL5_METAL
kelch domain-containing protein Tax=RIFCSPHIGHO2_01_FULL_OP11_Woesebacteria_38_26_curated
hypothetical protein
rifcsplowo2_01_scaffold_52783_11
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(6118..7749)
-----------------
DNA (1632bp)
protein (544aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003674B07
hypothetical protein Tax=CG_Woesearch_02
Histone acetyltransferase Elp3 like protein
rifcsplowo2_01_scaffold_52783_12
unknown

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7799..8725
-----------------
DNA (927bp)
protein (309aa)
Signal peptide peptidase SppA, 36K type n=1 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AES0_9EURY id=5103042 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Signal peptide peptidase SppA, 36K type n=1 Tax=Candidatus Haloredivivus sp. G17 RepID=H0AES0_9EURY Tax=AR20
Signal peptide peptidase SppA, 36K type
rifcsplowo2_01_scaffold_52783_13
unknown

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comp(8722..9078)
-----------------
DNA (357bp)
protein (119aa)

This feature has no annotations

rifcsplowo2_01_scaffold_52783_14
Methanothermococcus okinawensis, Methanothermococcus, Methanococcales, Methanococci, Euryarchaeota, Archaea

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9176..9373
-----------------
DNA (198bp)
protein (66aa)
antitoxin n=1 Tax=Methanothermococcus thermolithotrophicus RepID=UPI0003681341
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH07590.1}; TaxID=647113 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanothermococcus.;" source="Methanothermococcus
rifcsplowo2_01_scaffold_52783_15
AR19, Pacearchaeaota, DPANN, Archaea

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comp(9374..9571)
-----------------
DNA (198bp)
protein (66aa)
Tax=AR19
rifcsplowo2_01_scaffold_52783_16
AR19, Pacearchaeaota, DPANN, Archaea

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comp(9558..9899)
-----------------
DNA (342bp)
protein (114aa)
id=5044649 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tax=AR19
rifcsplowo2_01_scaffold_52783_17
Prevotella buccalis, Prevotella, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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10190..10432
-----------------
DNA (243bp)
protein (81aa)
PspC domain protein n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W8T6_9BACT
PspC family transcriptional regulator {ECO:0000313|EMBL:KGF34445.1}; TaxID=1401074 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Prevotellaceae; Prevotella.;" source="Prevotella buccal
hypothetical protein
rifcsplowo2_01_scaffold_52783_18

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10463..11980
-----------------
DNA (1518bp)
protein (506aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00282}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00282};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00282}
Phenylalanine--tRNA ligase alpha subunit id=5800822 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Phenylalanine-tRNA ligase alpha subunit
rifcsplowo2_01_scaffold_52783_19
unknown

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11982..12101
-----------------
DNA (120bp)
protein (40aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000374A334
Displaying 19 items

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