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rifcsplowo2_01_scaffold_27260

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_27260_1
RBG_16_Pacearchaeota_35_8_curated, Pacearchaeota, DPANN, Archaea

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2..2059
-----------------
DNA (2058bp)
protein (686aa)
thrS; putative threonyl-tRNA synthetase (EC:6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] Tax=RBG_16_Pacearchaeota_35_8_curated
hypothetical protein n=1 Tax=Methanomassiliicoccus luminyensis RepID=UPI00035CC481
threonyl-tRNA synthetase
rifcsplowo2_01_scaffold_27260_2

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2185..2340
-----------------
DNA (156bp)
protein (52aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=1579378 species="Archaea.;" s
Threonine--tRNA ligase n=6 Tax=Clostridium thermocellum RepID=SYT_CLOTH id=5102976 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Threonine-tRNA ligase
rifcsplowo2_01_scaffold_27260_3
unknown

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2324..2770
-----------------
DNA (447bp)
protein (149aa)

This feature has no annotations

rifcsplowo2_01_scaffold_27260_4

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comp(2808..4112)
-----------------
DNA (1305bp)
protein (435aa)
RNA-metabolising metallo-beta-lactamase n=1 Tax=Methanothermococcus okinawensis (strain DSM 14208 / JCM 11175 / IH1) RepID=F8AM50_METOI id=5102974 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
RNA-metabolising metallo-beta-lactamase
RNA-metabolising metallo-beta-lactamase {ECO:0000313|EMBL:AJF62255.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_27260_5
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(4109..4438)
-----------------
DNA (330bp)
protein (110aa)
hypothetical protein
hypothetical protein Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein; K09005 hypothetical protein id=5241189 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_27260_6
unknown

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4489..4776
-----------------
DNA (288bp)
protein (96aa)

This feature has no annotations

rifcsplowo2_01_scaffold_27260_7

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comp(5130..7298)
-----------------
DNA (2169bp)
protein (723aa)
Elongation factor 2 n=6 Tax=Methanocaldococcus RepID=EF2_METJA id=5103761 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Elongation factor 2 {ECO:0000256|HAMAP-Rule:MF_00054, ECO:0000256|SAAS:SAAS00088569}; Short=EF-2 {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
Elongation factor 2
rifcsplowo2_01_scaffold_27260_8

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comp(7304..7894)
-----------------
DNA (591bp)
protein (197aa)
30S ribosomal protein S7 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS7_NANEQ id=5103767 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Small subunit ribosomal protein S7 {ECO:0000313|EMBL:KHO52604.1}; TaxID=1579375 species="Archaea.;" source="archaeon GW2011_AR17.;"
30S ribosomal protein S7
rifcsplowo2_01_scaffold_27260_9

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comp(7891..8328)
-----------------
DNA (438bp)
protein (146aa)
30S ribosomal protein S12 n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=RS12_METKA id=5103768 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|RuleBase:RU004490}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_27260_10

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comp(8403..8801)
-----------------
DNA (399bp)
protein (133aa)
Putative KH domain protein n=3 Tax=environmental samples RepID=B3T301_9ARCH id=5103769 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF63047.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_27260_11

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comp(8798..9052)
-----------------
DNA (255bp)
protein (85aa)
50S ribosomal protein L30e n=12 Tax=Sulfolobus RepID=RL30E_SULSO id=5103775 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L30e
50S ribosomal protein L30e {ECO:0000313|EMBL:AJF63053.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_27260_12
AR18, Woesearchaeaota, DPANN, Archaea

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comp(9065..9451)
-----------------
DNA (387bp)
protein (129aa)
Uncharacterized protein Tax=AR18
Uncharacterized protein id=5048328 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsplowo2_01_scaffold_27260_13
unknown

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comp(9460..9633)
-----------------
DNA (174bp)
protein (58aa)
DNA-directed RNA polymerase subunit N n=1 Tax=uncultured organism HF70_19B12 RepID=Q2Q0G7_9ZZZZ id=5103677 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase subunit N n=1 Tax=uncultured organism HF70_19B12 RepID=Q2Q0G7_9ZZZZ Tax=AR20
DNA-directed RNA polymerase subunit N
rifcsplowo2_01_scaffold_27260_14
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(9679..10119)
-----------------
DNA (441bp)
protein (147aa)
30S ribosomal protein S9 n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GZF5_METFV id=5103678 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=CG_Woesearch_02
30S ribosomal protein S9
rifcsplowo2_01_scaffold_27260_15
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(10112..10534)
-----------------
DNA (423bp)
protein (141aa)
50S ribosomal protein L13P n=10 Tax=Thermococcus RepID=RL13_PYRKO id=5103680 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L13 Tax=CG_Woesearch_02
50S ribosomal protein L13P
rifcsplowo2_01_scaffold_27260_16

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comp(10531..10893)
-----------------
DNA (363bp)
protein (121aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037805E2
50S ribosomal protein L18e
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_27260_17

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comp(10895..11548)
-----------------
DNA (654bp)
protein (218aa)
DNA-directed RNA polymerase subunit D {ECO:0000256|HAMAP-Rule:MF_00320}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00320};; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
DNA-directed RNA polymerase subunit D n=1 Tax=Methanocella conradii (strain DSM 24694 / JCM 17849 / CGMCC 1.5162 / HZ254) RepID=H8I735_METCZ id=5103687 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase subunit D
rifcsplowo2_01_scaffold_27260_18
unknown

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comp(11549..11971)
-----------------
DNA (423bp)
protein (141aa)
30S ribosomal protein S11 n=4 Tax=Desulfurococcales RepID=RS11_HYPBU id=5103688 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S11 n=4 Tax=Desulfurococcales RepID=RS11_HYPBU Tax=AR20
30S ribosomal protein S11
rifcsplowo2_01_scaffold_27260_19

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comp(11961..12605)
-----------------
DNA (645bp)
protein (215aa)
30S ribosomal protein S4 n=2 Tax=Methanotorris RepID=F6BD43_METIK id=5103689 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000256|SAAS:SAAS00016650}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_27260_20
unknown

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comp(12607..13086)
-----------------
DNA (480bp)
protein (160aa)
30S ribosomal protein S13 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS13_NANEQ id=5103690 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S13 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS13_NANEQ Tax=AR20
30S ribosomal protein S13
rifcsplowo2_01_scaffold_27260_21

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comp(13128..13691)
-----------------
DNA (564bp)
protein (188aa)
DNA-binding protein n=3 Tax=Pyrococcus RepID=Q8TZW3_PYRFU id=5103692 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-binding protein
DNA-binding protein {ECO:0000313|EMBL:AJF62970.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_27260_22

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comp(13706..14038)
-----------------
DNA (333bp)
protein (111aa)
Conserved protein n=2 Tax=Methanothermobacter RepID=O27379_METTH id=5103693 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF62971.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_27260_23
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(14040..14330)
-----------------
DNA (291bp)
protein (97aa)
50S ribosomal protein L21; K02889 large subunit ribosomal protein L21e Tax=CG_Woesearch_02
LSU ribosomal protein L21E id=5799708 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L21e
rifcsplowo2_01_scaffold_27260_24
unknown

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comp(14356..14619)
-----------------
DNA (264bp)
protein (88aa)

This feature has no annotations

rifcsplowo2_01_scaffold_27260_25
AR20, Woesearchaeaota, DPANN, Archaea

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comp(14658..14951)
-----------------
DNA (294bp)
protein (98aa)
hypothetical protein
id=5103695 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Tax=AR20
rifcsplowo2_01_scaffold_27260_26
unknown

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comp(15016..15114)
-----------------
DNA (99bp)
protein (33aa)

This feature has no annotations

rifcsplowo2_01_scaffold_27260_27

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comp(15199..16386)
-----------------
DNA (1188bp)
protein (396aa)
Translation initiation factor 2 subunit gamma n=1 Tax=Methanocaldococcus infernus (strain DSM 11812 / JCM 15783 / ME) RepID=D5VQJ1_METIM id=5103750 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Translation initiation factor 2 subunit gamma
Translation initiation factor 2 subunit gamma {ECO:0000313|EMBL:AJF63028.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_27260_28
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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comp(16417..16677)
-----------------
DNA (261bp)
protein (87aa)
30S ribosomal protein S6e n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GY65_METFV
30S ribosomal protein S6; K02991 small subunit ribosomal protein S6e Tax=RBG_16_Micrarchaeota_36_9_curated
30S ribosomal protein S6e
Displaying 28 items

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