ggKbase home page

rifcsplowo2_01_scaffold_12670

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_12670_1
Methanobacterium sp. Maddingley MBC34, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

2..538
-----------------
DNA (537bp)
protein (179aa)
hypothetical protein
Nucleotidyltransferase family protein id=4759180 bin=PER_GWC2_41_7 species=Methanobacterium sp. Maddingley MBC34 genus=Methanobacterium taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Nucleotidyltransferase family protein {ECO:0000313|EMBL:EKQ52051.1}; TaxID=1220534 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source
rifcsplowo2_01_scaffold_12670_2
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

539..1084
-----------------
DNA (546bp)
protein (182aa)
hypothetical protein
Putative uncharacterized protein id=4759182 bin=PER_GWC2_41_7 species=sediment metagenome genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Putative uncharacterized protein Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_01_scaffold_12670_3
CG_CPArch01-01, CG_CPArch01, Archaea

Not on your lists

1130..1453
-----------------
DNA (324bp)
protein (108aa)
nascent polypeptide associated complex nac; K03626 nascent polypeptide-associated complex subunit alpha Tax=CG_CPArch01-01
nac; nascent polypeptide-associated complex protein; K03626 nascent polypeptide-associated complex subunit alpha id=5044110 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Nascent polypeptide-associated complex protein
rifcsplowo2_01_scaffold_12670_4

Not on your lists

1492..1956
-----------------
DNA (465bp)
protein (155aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003645100
hypothetical protein
Marine sediment metagenome DNA, contig: S01H4_L06962 {ECO:0000313|EMBL:GAG84387.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsplowo2_01_scaffold_12670_5
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

1953..2390
-----------------
DNA (438bp)
protein (146aa)
hypothetical protein
seg id=5044111 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
seg Tax=AR18
rifcsplowo2_01_scaffold_12670_6
CG_Pacearch_03, Pacearchaeota, Archaea

Not on your lists

2387..3163
-----------------
DNA (777bp)
protein (259aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037AEED3
cell division inhibitor minD; K03609 septum site-determining protein MinD Tax=CG_Pacearch_03
cell division ATPase MinD
rifcsplowo2_01_scaffold_12670_7
R_OD1_Falkowbacteria_56_16, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

3160..3753
-----------------
DNA (594bp)
protein (198aa)
transmembrane_regions 133..155 Tax=RIFCSPHIGHO2_02_FULL_OD1_Falkowbacteria_56_16_curated
transmembrane_regions 133..155 id=53589 bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
hypothetical protein
rifcsplowo2_01_scaffold_12670_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

3853..4020
-----------------
DNA (168bp)
protein (56aa)
Tax=CG_Woesearch_02
rifcsplowo2_01_scaffold_12670_9
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

4022..4348
-----------------
DNA (327bp)
protein (109aa)
id=4744551 Tax=CG_Woesearch_02
id=4744551 bin=GWC2_OP3_44_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_OP3_44_8 organism_group=OP3 (Omnitrophica) organism_desc=Same as GWF2_43_52
rifcsplowo2_01_scaffold_12670_10
RIFOXYB2_FULL_PER_ii_54_17_curated, PER-ii, Bacteria

Not on your lists

comp(4435..4962)
-----------------
DNA (528bp)
protein (176aa)
CMP deaminase n=1 Tax=Sphingomonas wittichii RepID=UPI000362D122
zinc-binding CMP/dCMP deaminase Tax=RIFOXYB2_FULL_PER_ii_54_17_curated
rifcsplowo2_01_scaffold_12670_11

Not on your lists

comp(4993..5382)
-----------------
DNA (390bp)
protein (130aa)
NUDIX hydrolase n=2 Tax=Desulfotomaculum RepID=F6B8C1_DESCC
Uncharacterized protein {ECO:0000313|EMBL:KKO02882.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
NUDIX hydrolase
rifcsplowo2_01_scaffold_12670_12

Not on your lists


5708..6904
-----------------
DNA (1197bp)
protein (399aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1457885 species="Archaea; Eu
Histidine--tRNA ligase n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SVR1_9BACT id=5103662 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Histidine-tRNA ligase
rifcsplowo2_01_scaffold_12670_13
RBG_16_Chloroflexi_58_14_curated, Chloroflexi, Bacteria

Not on your lists

6901..7821
-----------------
DNA (921bp)
protein (307aa)
OmpA/MotB domain protein n=1 Tax=Emticicia oligotrophica (strain DSM 17448 / GPTSA100-15) RepID=I2EVU7_EMTOG
outer membrane protein/peptidoglycan-associated (lipo)protein Tax=RBG_16_Chloroflexi_58_14_curated
hypothetical protein
rifcsplowo2_01_scaffold_12670_14
unknown

Not on your lists

comp(7832..8095)
-----------------
DNA (264bp)
protein (88aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12670_15
unknown

Not on your lists

comp(8144..8854)
-----------------
DNA (711bp)
protein (237aa)
Chromosome segregation and condensation protein ScpA n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GVZ3_9EURY id=5103660 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Chromosome segregation and condensation protein ScpA n=1 Tax=Candidatus Parvarchaeum acidophilus ARMAN-5 RepID=D6GVZ3_9EURY Tax=AR20
Chromosome segregation and condensation protein ScpA
rifcsplowo2_01_scaffold_12670_16
unknown

Not on your lists

9085..9315
-----------------
DNA (231bp)
protein (77aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12670_17

Not on your lists

comp(9467..9760)
-----------------
DNA (294bp)
protein (98aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000376F1AE
Ribosomal protein S24E
Ribosomal protein S24E {ECO:0000313|EMBL:AJF62936.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_12670_18
AR18, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(9757..9939)
-----------------
DNA (183bp)
protein (61aa)
DNA-directed RNA polymerase subunit E RpoE2; K03050 DNA-directed RNA polymerase subunit E" [EC:2.7.7.6] Tax=AR18
DNA-directed RNA polymerase subunit E RpoE2; K03050 DNA-directed RNA polymerase subunit E" [EC:2.7.7.6] id=5049720 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA-directed RNA polymerase, subunit E
rifcsplowo2_01_scaffold_12670_19

Not on your lists


comp(9936..10490)
-----------------
DNA (555bp)
protein (185aa)
DNA-directed RNA polymerase subunit E n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6VV26_9EURY id=5103653 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA-directed RNA polymerase subunit E
DNA-directed RNA polymerase subunit E {ECO:0000313|EMBL:AJF62934.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_12670_20
unknown

Not on your lists

comp(10527..10826)
-----------------
DNA (300bp)
protein (100aa)

This feature has no annotations

rifcsplowo2_01_scaffold_12670_21
unknown

Not on your lists

comp(10877..11233)
-----------------
DNA (357bp)
protein (119aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PM40_9ZZZZ id=5103652 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PM40_9ZZZZ Tax=AR20
hypothetical protein
rifcsplowo2_01_scaffold_12670_22
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(11230..11634)
-----------------
DNA (405bp)
protein (135aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003707988
hypothetical protein Tax=CG_Woesearch_02
hypothetical protein
rifcsplowo2_01_scaffold_12670_23
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(11624..12067)
-----------------
DNA (444bp)
protein (148aa)
hypothetical protein
id=5103621 Tax=CG_Woesearch_02
id=5103621 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Displaying 23 items

View Taxonomy