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rifcsplowo2_01_scaffold_11365

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_11365_1
Scytonema tolypothrichoides, Scytonema, Nostocales, Cyanobacteria, Bacteria

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comp(1..474)
-----------------
DNA (474bp)
protein (158aa)
hypothetical protein n=1 Tax=Nocardiopsis gilva RepID=UPI000349337C
Uncharacterized protein {ECO:0000313|EMBL:KIJ82158.1}; TaxID=1233231 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema tolypothrichoides VB-61278.;"
isochorismatase hydrolase
rifcsplowo2_01_scaffold_11365_2
AR18, Woesearchaeaota, DPANN, Archaea

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comp(499..1110)
-----------------
DNA (612bp)
protein (204aa)
hypothetical protein; K07038 inner membrane protein id=5049593 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein; K07038 inner membrane protein Tax=AR18
hypothetical protein
rifcsplowo2_01_scaffold_11365_3
unknown

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comp(1128..1931)
-----------------
DNA (804bp)
protein (268aa)

This feature has no annotations

rifcsplowo2_01_scaffold_11365_4

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2105..2314
-----------------
DNA (210bp)
protein (70aa)
Marine sediment metagenome DNA, contig: S06H3_L02280 {ECO:0000313|EMBL:GAI15546.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
rifcsplowo2_01_scaffold_11365_5
RIFOXYC2_FULL_RIF01_39_67_curated, RIF1, Bacteria

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2311..4101
-----------------
DNA (1791bp)
protein (597aa)
seg Tax=RIFOXYC2_FULL_RIF01_39_67_curated
rifcsplowo2_01_scaffold_11365_6
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

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4059..5837
-----------------
DNA (1779bp)
protein (593aa)
Tax=GWA2_WOR_2_47_8_curated
rifcsplowo2_01_scaffold_11365_7
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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5834..6634
-----------------
DNA (801bp)
protein (267aa)
Uncharacterized protein AF_1947 n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=Y1947_ARCFU
Putative hemolysin
Putative hemolysin {ECO:0000313|EMBL:AIG98938.1}; TaxID=1344584 species="Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus.;" source="Archaeoglobus fulgidus DSM 87
rifcsplowo2_01_scaffold_11365_8
AR18, Woesearchaeaota, DPANN, Archaea

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comp(6618..7049)
-----------------
DNA (432bp)
protein (144aa)
id=5049518 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Tax=AR18
rifcsplowo2_01_scaffold_11365_9

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comp(7046..7531)
-----------------
DNA (486bp)
protein (162aa)
hypothetical protein id=5049517 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO53853.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
rifcsplowo2_01_scaffold_11365_10
unknown

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comp(7694..8281)
-----------------
DNA (588bp)
protein (196aa)

This feature has no annotations

rifcsplowo2_01_scaffold_11365_11

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comp(8274..9158)
-----------------
DNA (885bp)
protein (295aa)
PP-loop domain containing protein id=5046311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
PP-loop protein {ECO:0000313|EMBL:KHO46112.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsplowo2_01_scaffold_11365_12
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(9155..9349)
-----------------
DNA (195bp)
protein (65aa)
id=5046312 Tax=RBG_13_Woesearchaeota_36_6_curated
ThiS family, putative id=5800095 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein; K03154 sulfur carrier protein
rifcsplowo2_01_scaffold_11365_13

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comp(9333..10106)
-----------------
DNA (774bp)
protein (258aa)
thiamine biosynthesis/tRNA modification protein ThiI; K03151 thiamine biosynthesis protein ThiI id=5048296 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Thiamine biosynthesis protein ThiI {ECO:0000313|EMBL:KHO54014.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
thiamine biosynthesis/tRNA modification protein ThiI
rifcsplowo2_01_scaffold_11365_14

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10197..10787
-----------------
DNA (591bp)
protein (197aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036942D7
TATA-box-binding protein
Marine sediment metagenome DNA, contig: S12H4_S05138 {ECO:0000313|EMBL:GAI96315.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsplowo2_01_scaffold_11365_15

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10915..12579
-----------------
DNA (1665bp)
protein (555aa)
MCM family protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] id=5048855 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Replicative DNA helicase Mcm {ECO:0000313|EMBL:KHO53924.1}; EC=3.6.4.- {ECO:0000313|EMBL:KHO53924.1};; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
DNA replication initiator Cdc21/Cdc54
rifcsplowo2_01_scaffold_11365_16
Halanaeroarchaeum sulfurireducens, Halanaeroarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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12527..14881
-----------------
DNA (2355bp)
protein (785aa)
Putative ATPase involved in replication control, Cdc46/Mcm family n=1 Tax=Natronococcus occultus SP4 RepID=L0JUS0_9EURY rbh
ATP-dependent DNA helicase (Intein-containing) {ECO:0000313|EMBL:AKH96645.1}; TaxID=1604004 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halanaeroarchaeum.;" sourc
putative ATPase involved in replication control, Cdc46/Mcm family
rifcsplowo2_01_scaffold_11365_17
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(14878..15726)
-----------------
DNA (849bp)
protein (283aa)
hypothetical protein
hypothetical protein Tax=CG_Woesearch_02
Uncharacterized membrane protein id=5041824 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_11365_18
CG_Micra_01, Micraarchaeota, Archaea

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15825..16454
-----------------
DNA (630bp)
protein (210aa)
Uncharacterized protein n=1 Tax=Thermoplasmatales archaeon I-plasma RepID=T0LCI0_9EURY
type II restriction modification system, restriction subunit Tax=CG_Micra_01
hypothetical protein
rifcsplowo2_01_scaffold_11365_19
R_OP11_Levybacteria_38_21, Levybacteria, Microgenomates, Bacteria

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comp(16436..17350)
-----------------
DNA (915bp)
protein (305aa)
DNA modification methylase n=1 Tax=Fervidobacterium pennivorans (strain DSM 9078 / Ven5) RepID=H9UE48_FERPD
adenine-specific DNA-methyltransferase-like protein Tax=RIFCSPLOWO2_01_FULL_OP11_Levybacteria_38_21_curated
DNA modification methylase
rifcsplowo2_01_scaffold_11365_20
unknown

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comp(17751..18029)
-----------------
DNA (279bp)
protein (93aa)

This feature has no annotations

rifcsplowo2_01_scaffold_11365_21

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18159..18569
-----------------
DNA (411bp)
protein (137aa)
translation initiation factor IF-2 subunit beta; K03238 translation initiation factor 2 subunit 2 id=5041823 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Translation initiation factor 2 subunit 2 {ECO:0000313|EMBL:KHO47251.1}; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
Translation initiation factor 2 subunit beta
rifcsplowo2_01_scaffold_11365_22

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18569..18856
-----------------
DNA (288bp)
protein (96aa)
Marine sediment metagenome DNA, contig: S12H4_S02448 {ECO:0000313|EMBL:GAI95743.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
Uncharacterized protein id=5800099 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsplowo2_01_scaffold_11365_23
Palaeococcus pacificus, Palaeococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

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comp(18872..23896)
-----------------
DNA (5025bp)
protein (1675aa)
DNA polymerase II large subunit (EC:2.7.7.7)
DNA polymerase II large subunit {ECO:0000256|HAMAP-Rule:MF_00324}; Short=Pol II {ECO:0000256|HAMAP-Rule:MF_00324};; EC=2.7.7.7 {ECO:0000256|HAMAP-Rule:MF_00324};; TaxID=1343739 species="Archaea; Eurya
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00037716FE
rifcsplowo2_01_scaffold_11365_24
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(23893..25419)
-----------------
DNA (1527bp)
protein (509aa)
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] Tax=CG_Woesearch_02
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] id=5046338 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsplowo2_01_scaffold_11365_25
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(25440..26687)
-----------------
DNA (1248bp)
protein (416aa)
Cell division control protein 6 homolog id=2334556 bin=GWA2_Bacteroidetes_40_14 species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GWA2_Bacteroidetes_40_14 organism_group=Bacteroidetes organism_desc=Good
cdc6; cell division control protein 6; K10725 archaeal cell division control protein 6 Tax=RBG_13_Woesearchaeota_36_6_curated
ORC1-type DNA replication protein
rifcsplowo2_01_scaffold_11365_26

Not on your lists

27298..31638
-----------------
DNA (4341bp)
protein (1447aa)
Marine sediment metagenome DNA, contig: S01H1_L06751 {ECO:0000313|EMBL:GAF80767.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
Displaying 26 items

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