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rifcsplowo2_01_scaffold_2876

Search features with annotation key words

Displaying items 1-30 of 96 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsplowo2_01_scaffold_2876_1
unknown

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3..116
-----------------
DNA (114bp)
protein (38aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2876_2
RBG_13_RIF_OD1_08_37_53_curated, RIF-OD1-8, Parcubacteria, Bacteria

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696..806
-----------------
DNA (111bp)
protein (37aa)
cysteinyl-tRNA synthetase; K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16]
Cysteine--tRNA ligase n=2 Tax=Dictyoglomus RepID=SYC_DICT6 id=5103307 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsplowo2_01_scaffold_2876_3
CG_Woesearch_02, Woesearchaeota, Archaea

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763..2124
-----------------
DNA (1362bp)
protein (454aa)
cysS; Cysteinyl-tRNA synthetase (EC:6.1.1.16); K01883 cysteinyl-tRNA synthetase [EC:6.1.1.16] id=5048461 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
cysS; cysteinyl-tRNA synthetase (EC:6.1.1.16)
rifcsplowo2_01_scaffold_2876_4
unknown

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comp(2129..2782)
-----------------
DNA (654bp)
protein (218aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2876_5

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comp(2848..5244)
-----------------
DNA (2397bp)
protein (799aa)
BSCG--tRNA--synthetase--Valyl
ASCG--Valyl-tRNA--synthetase
valS; valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] id=5048462 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Valine-tRNA ligase
rifcsplowo2_01_scaffold_2876_6
unknown

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5297..5473
-----------------
DNA (177bp)
protein (59aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2876_7
CG_Woesearch_03, Woesearchaeota, Archaea

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5491..6348
-----------------
DNA (858bp)
protein (286aa)
PREDICTED: dentin sialophosphoprotein n=1 Tax=Pantholops hodgsonii RepID=UPI0003C15B90
hypothetical protein
rifcsplowo2_01_scaffold_2876_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(6363..7577)
-----------------
DNA (1215bp)
protein (405aa)
replication factor C large subunit; K04800 replication factor C large subunit id=5048465 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
replication factor C large subunit
rifcsplowo2_01_scaffold_2876_9
RIFOXYB2_FULL_WOR_2_38_16_curated, WOR-2, Bacteria

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7688..9130
-----------------
DNA (1443bp)
protein (481aa)
Transporter id=3623456 bin=GWF2_OP3_38_59 species=Moorea producens genus=Moorea taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
sodium- and chloride-dependent transporter
rifcsplowo2_01_scaffold_2876_10
RBG_16_OP11_39_9b_curated, Microgenomates, Bacteria

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9167..10087
-----------------
DNA (921bp)
protein (307aa)
Uncharacterized protein n=1 Tax=Methanolinea tarda NOBI-1 RepID=G6FGL1_9EURY
hypothetical protein
rifcsplowo2_01_scaffold_2876_11

Not on your lists


10231..11739
-----------------
DNA (1509bp)
protein (503aa)
ASCG--Glycyl-tRNA--synthetase
glycyl-tRNA synthetase (EC:6.1.1.14)
Glycyl-tRNA synthetase id=5799897 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_2876_12
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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11936..12262
-----------------
DNA (327bp)
protein (109aa)
hypothetical protein id=5094111 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
hypothetical protein
rifcsplowo2_01_scaffold_2876_13
AR9, Woesearchaeaota, DPANN, Archaea

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comp(12271..12765)
-----------------
DNA (495bp)
protein (165aa)
DnaJ-like molecular chaperone n=1 Tax=Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M) RepID=Q12WP2_METBU
heat shock protein DnaJ-like protein
rifcsplowo2_01_scaffold_2876_14

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comp(12827..13051)
-----------------
DNA (225bp)
protein (75aa)
Cold shock DNA binding domain protein id=5799625 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
cold shock DNA binding domain-containing protein
rifcsplowo2_01_scaffold_2876_15
RBG_13_RIF03_48_7_curated, RIF3, Bacteria

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13356..13820
-----------------
DNA (465bp)
protein (155aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E9W5_METEZ
rifcsplowo2_01_scaffold_2876_16
AR11, Woesearchaeaota, DPANN, Archaea

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14018..16576
-----------------
DNA (2559bp)
protein (853aa)
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1] id=5040699 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent (EC:1.17.4.1)
rifcsplowo2_01_scaffold_2876_17

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16726..17337
-----------------
DNA (612bp)
protein (204aa)
cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
Cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase n=2 Tax=Pyrococcus furiosus RepID=I6V0T9_9EURY
rifcsplowo2_01_scaffold_2876_18
unknown

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comp(17334..17663)
-----------------
DNA (330bp)
protein (110aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2876_19
RBG_16_Archaea_50_20_curated, Archaea

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comp(17647..17925)
-----------------
DNA (279bp)
protein (93aa)
phhB; pterin-4-alpha-carbinolamine dehydratase (EC:4.2.1.96)
hypothetical protein n=1 Tax=Geitlerinema sp. PCC 7105 RepID=UPI0003619595
rifcsplowo2_01_scaffold_2876_20
unknown

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18028..18159
-----------------
DNA (132bp)
protein (44aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2876_21
Deferribacter desulfuricans, Deferribacter, Deferribacterales, Deferribacteres, Deferribacteres, Bacteria

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18164..20002
-----------------
DNA (1839bp)
protein (613aa)
nrdA; ribonucleoside-diphosphate reductase alpha chain (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase n=1 Tax=Deferribacter desulfuricans (strain DSM 14783 / JCM 11476 / NBRC 101012 / SSM1) RepID=D3PDG5_DEFDS
rifcsplowo2_01_scaffold_2876_22
RLO_OD1_60_15, Parcubacteria, Bacteria

Not on your lists

20004..20519
-----------------
DNA (516bp)
protein (172aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037FBBE4
N-acetyltransferase GCN5
rifcsplowo2_01_scaffold_2876_23
CG_Woesearch_01, Woesearchaeota, Archaea

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20571..21170
-----------------
DNA (600bp)
protein (200aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003816AF2
hypothetical protein
rifcsplowo2_01_scaffold_2876_24
CG_Woesearch_01, Woesearchaeota, Archaea

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21167..21427
-----------------
DNA (261bp)
protein (87aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI0003707988
hypothetical protein
rifcsplowo2_01_scaffold_2876_25

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21438..21992
-----------------
DNA (555bp)
protein (185aa)
Putative uncharacterized protein id=1745640 bin=GWE2_Clostridiales_32_10 species=Candidatus Micrarchaeum acidiphilum genus=Candidatus Micrarchaeum taxon_order=unknown taxon_class=unknown phylum=Euryarchaeota tax=GWE2_Clostridiales_32_10 organism_group=Clostridiales
YdeN-like protein
rifcsplowo2_01_scaffold_2876_26
Archaeoglobus veneficus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

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22036..23205
-----------------
DNA (1170bp)
protein (390aa)
Major facilitator superfamily MFS_1 n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KP11_ARCVS
major facilitator superfamily protein
rifcsplowo2_01_scaffold_2876_27
AR11, Woesearchaeaota, DPANN, Archaea

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23207..23707
-----------------
DNA (501bp)
protein (167aa)
hypothetical protein n=1 Tax=candidate division OD1 bacterium SCGC AAA011-J16 RepID=UPI000378B6FD
membrane protein
rifcsplowo2_01_scaffold_2876_28

Not on your lists

23862..24194
-----------------
DNA (333bp)
protein (111aa)
hypothetical protein
Uncharacterised protein family UPF0175 id=5241736 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_2876_29
AR5, Aenigmarchaeota, DPANN, Archaea

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24360..24806
-----------------
DNA (447bp)
protein (149aa)
thiol-specific antioxidant protein id=18248451 bin=AR5_curated_draft species=Leptospirillum sp. Group II '5-way CG' genus=Leptospirillum taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
alkyl hydroperoxide reductase
rifcsplowo2_01_scaffold_2876_30
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

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24816..25295
-----------------
DNA (480bp)
protein (160aa)
Bacterioferritin id=1250209 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
bacterioferritin
Displaying items 1-30 of 96 in total

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