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rifcsplowo2_01_scaffold_4944

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
rifcsplowo2_01_scaffold_4944_1
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(1..915)
-----------------
DNA (915bp)
protein (305aa)
Modification methylase MjaII n=1 Tax=Clostridium ultunense Esp RepID=M1ZB30_9CLOT
DNA methylase N-4/N-6 domain-containing protein
rifcsplowo2_01_scaffold_4944_2
CG_Pacearch_06, Pacearchaeota, Archaea

Not on your lists

comp(912..1052)
-----------------
DNA (141bp)
protein (47aa)
rifcsplowo2_01_scaffold_4944_3

Not on your lists

comp(1555..1770)
-----------------
DNA (216bp)
protein (72aa)
id=5048720 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsplowo2_01_scaffold_4944_4
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists

comp(1772..2092)
-----------------
DNA (321bp)
protein (107aa)
id=5048719 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_4944_5

Not on your lists

comp(2161..3342)
-----------------
DNA (1182bp)
protein (394aa)
malate dehydrogenase oxaloacetate-decarboxylating (EC:1.1.1.38)
Malate dehydrogenase (Oxaloacetate-decarboxylating) id=2698727 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
rifcsplowo2_01_scaffold_4944_6
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(3308..4489)
-----------------
DNA (1182bp)
protein (394aa)
gdhA; glutamate dehydrogenase (EC:1.4.1.2)
Glutamate dehydrogenase id=5799766 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_4944_7
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(4501..4743)
-----------------
DNA (243bp)
protein (81aa)
Glutaredoxin-like protein, YruB-family n=1 Tax=Clostridium sp. Maddingley MBC34-26 RepID=K6TKH0_9CLOT
YruB family glutaredoxin-like protein
rifcsplowo2_01_scaffold_4944_8

Not on your lists

comp(4913..5602)
-----------------
DNA (690bp)
protein (230aa)
rifcsplowo2_01_scaffold_4944_9
GWC2_CPR2_39_10, CPR2, Bacteria

Not on your lists

5685..6515
-----------------
DNA (831bp)
protein (277aa)
endonuclease IV; K01151 deoxyribonuclease IV [EC:3.1.21.2] id=5049173 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsplowo2_01_scaffold_4944_10
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(6590..7705)
-----------------
DNA (1116bp)
protein (372aa)
Thiol-disulfide isomerase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INX2_NITGG
thiol-disulfide isomerase
rifcsplowo2_01_scaffold_4944_11

Not on your lists

comp(7702..8403)
-----------------
DNA (702bp)
protein (234aa)
cytochrome c biogenesis protein (EC:4.4.1.17); K06196 cytochrome c-type biogenesis protein id=5048645 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
cytochrome c-type biogenesis protein (EC:4.4.1.17)
rifcsplowo2_01_scaffold_4944_12
GWA2_OD1_41_14_partial, Falkowbacteria, Parcubacteria, Bacteria

Not on your lists

comp(8468..9286)
-----------------
DNA (819bp)
protein (273aa)
high-affinity iron transporter; K07243 high-affinity iron transporter id=5046616 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
high-affinity iron transporter
rifcsplowo2_01_scaffold_4944_13
unknown

Not on your lists

comp(9296..9469)
-----------------
DNA (174bp)
protein (58aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4944_14
Thermococcus cleftensis, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

comp(9604..10053)
-----------------
DNA (450bp)
protein (150aa)
Transcription regulator, AsnC family 4 n=1 Tax=Thermococcus sp. CL1 RepID=I3ZUM2_9EURY
transcription regulator, AsnC family 4
rifcsplowo2_01_scaffold_4944_15

Not on your lists

comp(10054..10755)
-----------------
DNA (702bp)
protein (234aa)
hypothetical protein
id=5046296 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_4944_16
R_RIF_OD1_06_39_25, RIF-OD1-6, Parcubacteria, Bacteria

Not on your lists

comp(10804..11307)
-----------------
DNA (504bp)
protein (168aa)
hypothetical protein id=5049638 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsplowo2_01_scaffold_4944_17
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

11551..12117
-----------------
DNA (567bp)
protein (189aa)
rifcsplowo2_01_scaffold_4944_18
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists


12168..14333
-----------------
DNA (2166bp)
protein (722aa)
ASCG--Methionyl-tRNA--synthetase
protein containing C-terminal region/beta chain of methionyl-tRNA synthetase (EC:6.1.1.10)
Methionine--tRNA ligase id=5799554 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_4944_19
unknown

Not on your lists

comp(14326..16188)
-----------------
DNA (1863bp)
protein (621aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4944_20
Parcubacteria bacterium GW2011_GWA2_48_9, Parcubacteria, Bacteria

Not on your lists

comp(16185..16961)
-----------------
DNA (777bp)
protein (259aa)
rifcsplowo2_01_scaffold_4944_21
Archaeoglobus fulgidus, Archaeoglobus, Archaeoglobales, Archaeoglobi, Euryarchaeota, Archaea

Not on your lists

comp(16994..17818)
-----------------
DNA (825bp)
protein (275aa)
Uncharacterized protein AF_1947 n=1 Tax=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) RepID=Y1947_ARCFU
Putative hemolysin
rifcsplowo2_01_scaffold_4944_22
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

comp(17820..19439)
-----------------
DNA (1620bp)
protein (540aa)
rifcsplowo2_01_scaffold_4944_23
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(19423..19578)
-----------------
DNA (156bp)
protein (52aa)
seg id=5043702 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_4944_24
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

19824..20399
-----------------
DNA (576bp)
protein (192aa)
Iron-sulfur cluster assembly accessory protein n=2 Tax=Waddlia chondrophila RepID=D6YW49_WADCW id=5103548 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Iron-sulfur cluster assembly accessory protein
rifcsplowo2_01_scaffold_4944_25
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

20714..21412
-----------------
DNA (699bp)
protein (233aa)
DNA-(apurinic or apyrimidinic site) lyase (EC:4.2.99.18)
Probable N-glycosylase/DNA lyase id=5800247 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_4944_26
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

21414..22079
-----------------
DNA (666bp)
protein (222aa)
putative DNA glycosylase/AP lyase (EC:3.2.2.- 4.2.99.18)
Endonuclease III n=1 Tax=Caldisericum exile (strain DSM 21853 / NBRC 104410 / AZM16c01) RepID=I0GKX8_CALEA
rifcsplowo2_01_scaffold_4944_27
R_OD1_Magasanikbacteria_50_9b, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

22160..22570
-----------------
DNA (411bp)
protein (137aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAD1_9BACT
hypothetical protein
rifcsplowo2_01_scaffold_4944_28
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

22570..22860
-----------------
DNA (291bp)
protein (97aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000364C9D1
rifcsplowo2_01_scaffold_4944_29
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

22863..23285
-----------------
DNA (423bp)
protein (141aa)
hypothetical protein n=1 Tax=Paenibacillus elgii RepID=UPI000248C748
hypothetical protein
rifcsplowo2_01_scaffold_4944_30
GWA2_Berkelbacteria_38_9, Berkelbacteria, Bacteria

Not on your lists

23515..25023
-----------------
DNA (1509bp)
protein (503aa)
Putative WD domain, G-beta repeat n=1 Tax=uncultured marine microorganism HF4000_APKG10F17 RepID=B3TBZ6_9ZZZZ
serine/threonine protein kinase with WD40 repeats
Displaying items 1-30 of 31 in total

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