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rifcsplowo2_01_scaffold_27801

Search features with annotation key words

Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_27801_1

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1..360
-----------------
DNA (360bp)
protein (120aa)
dph2; 2-(3-amino-3-carboxypropyl)histidine synthase (EC:2.5.1.108)
hypothetical protein; K07561 diphthamide synthase subunit DPH2 id=18248385 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Uncharacterized protein {ECO:0000313|EMBL:KHO48388.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
rifcsplowo2_01_scaffold_27801_2

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383..985
-----------------
DNA (603bp)
protein (201aa)
ribE; riboflavin synthase subunit alpha RibE (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] id=5044453 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
Riboflavin synthase {ECO:0000313|EMBL:KHO48389.1}; EC=2.5.1.9 {ECO:0000313|EMBL:KHO48389.1};; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
riboflavin synthase alpha chain
rifcsplowo2_01_scaffold_27801_3

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comp(1184..1906)
-----------------
DNA (723bp)
protein (241aa)
cytochrome c biogenesis protein (EC:4.4.1.17); K06196 cytochrome c-type biogenesis protein id=5044455 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
cytochrome c-type biogenesis protein (EC:4.4.1.17)
Disulfide bond oxidoreductase D family protein {ECO:0000313|EMBL:KHO48391.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
rifcsplowo2_01_scaffold_27801_4
AR5, Aenigmarchaeota, DPANN, Archaea

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1958..2221
-----------------
DNA (264bp)
protein (88aa)
alias=gwa2_scaffold_521_196 id=18248390 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
alias=gwa2_scaffold_521_196 Tax=AR5
RNA polymerase dimerization
rifcsplowo2_01_scaffold_27801_5

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2252..2872
-----------------
DNA (621bp)
protein (207aa)
Marine sediment metagenome DNA, contig: S01H1_S26536 {ECO:0000313|EMBL:GAG30839.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
rifcsplowo2_01_scaffold_27801_6
AR5, Aenigmarchaeota, DPANN, Archaea

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2962..3474
-----------------
DNA (513bp)
protein (171aa)
hypothetical protein
Signal peptidase I id=18248391 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Signal peptidase I Tax=AR5
rifcsplowo2_01_scaffold_27801_7
unknown

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comp(3486..4070)
-----------------
DNA (585bp)
protein (195aa)

This feature has no annotations

rifcsplowo2_01_scaffold_27801_8
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(4139..4606)
-----------------
DNA (468bp)
protein (156aa)
alias=gwa2_scaffold_521_198 id=18248392 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
alias=gwa2_scaffold_521_198 Tax=AR5
rifcsplowo2_01_scaffold_27801_9
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(4607..5344)
-----------------
DNA (738bp)
protein (246aa)
alias=gwa2_scaffold_521_199 id=18248393 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
alias=gwa2_scaffold_521_199 Tax=AR5
rifcsplowo2_01_scaffold_27801_10
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(5350..6282)
-----------------
DNA (933bp)
protein (311aa)
hypothetical protein id=18248394 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
hypothetical protein Tax=AR5
putative transcriptional regulator
rifcsplowo2_01_scaffold_27801_11

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6818..7027
-----------------
DNA (210bp)
protein (70aa)
alias=gwa2_scaffold_521_201 id=18248395 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
Uncharacterized protein {ECO:0000313|EMBL:KHO48398.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
rifcsplowo2_01_scaffold_27801_12
AR5, Aenigmarchaeota, DPANN, Archaea

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7192..7392
-----------------
DNA (201bp)
protein (67aa)
id=5044463 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
alias=gwa2_scaffold_521_202 Tax=AR5
rifcsplowo2_01_scaffold_27801_13
AR5, Aenigmarchaeota, DPANN, Archaea

Not on your lists

7589..7996
-----------------
DNA (408bp)
protein (136aa)
transcription termination factor Tfs; K03057 transcription elongation factor id=18248397 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
transcription termination factor Tfs; K03057 transcription elongation factor Tax=AR5
Transcription elongation factor S (TFS_arch)
rifcsplowo2_01_scaffold_27801_14
unknown

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8287..9312
-----------------
DNA (1026bp)
protein (342aa)

This feature has no annotations

rifcsplowo2_01_scaffold_27801_15
unknown

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9315..10667
-----------------
DNA (1353bp)
protein (451aa)

This feature has no annotations

rifcsplowo2_01_scaffold_27801_16
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(10843..11034)
-----------------
DNA (192bp)
protein (64aa)
alias=gwa2_scaffold_521_204 id=18248398 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
alias=gwa2_scaffold_521_204 Tax=AR5
rifcsplowo2_01_scaffold_27801_17
AR5, Aenigmarchaeota, DPANN, Archaea

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11140..11583
-----------------
DNA (444bp)
protein (148aa)
alias=gwa2_scaffold_521_205 Tax=AR5
alias=gwa2_scaffold_521_205 id=18248399 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
rifcsplowo2_01_scaffold_27801_18

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comp(11580..11852)
-----------------
DNA (273bp)
protein (91aa)
DEAD/DEAH box helicase-like protein {ECO:0000313|EMBL:KHO48403.1}; TaxID=1579367 species="Archaea.;" source="archaeon GW2011_AR5.;"
DEAD/DEAH box helicase-like protein id=18248400 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
DEAD/DEAH box helicase family protein
rifcsplowo2_01_scaffold_27801_19
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(11849..12682)
-----------------
DNA (834bp)
protein (278aa)
DEAD/DEAH box helicase-like protein id=18248400 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
DEAD/DEAH box helicase-like protein Tax=AR5
DEAD/DEAH box helicase domain-containing protein
rifcsplowo2_01_scaffold_27801_20
AR5, Aenigmarchaeota, DPANN, Archaea

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13122..14042
-----------------
DNA (921bp)
protein (307aa)
elongation factor Tu domain 2 protein id=18248401 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft rbh
elongation factor Tu domain 2 protein Tax=AR5
selenocysteine-specific translation elongation factor
rifcsplowo2_01_scaffold_27801_21
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(14049..14957)
-----------------
DNA (909bp)
protein (303aa)
NADH dehydrogenase-like protein id=18248402 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
NADH dehydrogenase-like protein Tax=AR5
NAD-dependent epimerase/dehydratase
rifcsplowo2_01_scaffold_27801_22
Candidatus Nitrososphaera evergladensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

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14978..16264
-----------------
DNA (1287bp)
protein (429aa)
NAD-dependent aldehyde dehydrogenase (EC:1.2.1.16)
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:AIF82842.1}; EC=1.2.1.16 {ECO:0000313|EMBL:AIF82842.1};; TaxID=1459636 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitr
Succinate-semialdehyde dehydrogenase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0INL9_NITGG
Displaying 22 items

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