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rifcsplowo2_01_scaffold_4598

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_4598_1
Ignicoccus hospitalis, Ignicoccus, Desulfurococcales, Thermoprotei, Crenarchaeota, Archaea

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comp(1..849)
-----------------
DNA (849bp)
protein (283aa)
Probable translation initiation factor IF-2 id=4010259 bin=PER_GWC2_41_7 species=Methanothermus fervidus genus=Methanothermus taxon_order=Methanobacteriales taxon_class=Methanobacteria phylum=Euryarchaeota tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
translation initiation factor IF-2
Probable translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100}; TaxID=453591 species="Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Ignicoccus.;" source="
rifcsplowo2_01_scaffold_4598_2
Methanopyrus kandleri, Methanopyrus, Methanopyrales, Methanopyri, Euryarchaeota, Archaea

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comp(876..1367)
-----------------
DNA (492bp)
protein (164aa)
Probable translation initiation factor IF-2 n=1 Tax=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) RepID=IF2P_METKA
InfB_2; translation initiation factor IF-2
Probable translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100}; TaxID=190192 species="Archaea; Euryarchaeota; Methanopyri; Methanopyrales; Methanopyraceae; Methanopyrus.;" source="Metha
rifcsplowo2_01_scaffold_4598_3
R_OD1_Magasanikbacteria_50_9b, Magasanikbacteria, Parcubacteria, Bacteria

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comp(1575..2204)
-----------------
DNA (630bp)
protein (210aa)
id=4010251 bin=PER_GWC2_41_7 species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
oxidoreductase FAD-binding domain-containing protein Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_50_9b_curated
hypothetical protein
rifcsplowo2_01_scaffold_4598_4
unknown

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comp(2254..2748)
-----------------
DNA (495bp)
protein (165aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4598_5
RIFOXYD1_FULL_RIF_OD1_06_32_13_curated, RIF-OD1-6, Parcubacteria, Bacteria

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2857..3600
-----------------
DNA (744bp)
protein (248aa)
Methyltransferase domain family n=1 Tax=Clostridium botulinum (strain Alaska E43 / Type E3) RepID=B2UWI9_CLOBA
methyltransferase domain-containing protein Tax=RIFOXYD1_FULL_RIF_OD1_06_32_13_curated
hypothetical protein
rifcsplowo2_01_scaffold_4598_6

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comp(3776..4246)
-----------------
DNA (471bp)
protein (157aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
Adenylate kinase id=4010249 bin=PER_GWC2_41_7 species=Streptomyces sp. e14 genus=Streptomyces taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
adk; adenylate kinase
rifcsplowo2_01_scaffold_4598_7

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comp(4421..4747)
-----------------
DNA (327bp)
protein (109aa)
30S ribosomal protein S10 id=4010246 bin=PER_GWC2_41_7 species=Methanohalobium evestigatum genus=Methanohalobium taxon_order=Methanosarcinales taxon_class=Methanomicrobia phylum=Euryarchaeota tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508, ECO:0000256|SAAS:SAAS00243320}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S10
rifcsplowo2_01_scaffold_4598_8
unknown

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4808..5050
-----------------
DNA (243bp)
protein (81aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4598_9

Not on your lists

comp(5047..6525)
-----------------
DNA (1479bp)
protein (493aa)
hypothetical protein
Putative uncharacterized protein id=4010244 bin=PER_GWC2_41_7 species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
Uncharacterized protein {ECO:0000313|EMBL:AJF62601.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_4598_10
unknown

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comp(6547..6750)
-----------------
DNA (204bp)
protein (68aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4598_11
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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comp(6876..8141)
-----------------
DNA (1266bp)
protein (422aa)
ef1a, tuf; elongation factor 1-alpha (EC:3.6.5.3); K03231 elongation factor 1-alpha Tax=RBG_16_Micrarchaeota_36_9_curated
Elongation factor 1-alpha id=4010240 bin=PER_GWC2_41_7 species=unknown genus=Thermoplasma taxon_order=Thermoplasmatales taxon_class=Thermoplasmata phylum=Euryarchaeota tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria) rbh
Elongation factor 1-alpha
rifcsplowo2_01_scaffold_4598_12
unknown

Not on your lists

8257..8796
-----------------
DNA (540bp)
protein (180aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4598_13
Thermodesulfobacterium geofontis, Thermodesulfobacterium, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

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comp(8793..9146)
-----------------
DNA (354bp)
protein (118aa)
riboflavin biosynthesis protein RibF (EC:2.7.1.26 2.7.7.2)
Riboflavin biosynthesis protein {ECO:0000256|PIRNR:PIRNR004491}; EC=2.7.1.26 {ECO:0000256|PIRNR:PIRNR004491};; EC=2.7.7.2 {ECO:0000256|PIRNR:PIRNR004491};; TaxID=795359 species="Bacteria; Thermodesulf
Riboflavin biosynthesis protein RibF n=1 Tax=Thermodesulfobacterium geofontis (strain OPB45) RepID=F8C4D1_THEGP
rifcsplowo2_01_scaffold_4598_14
unknown

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9216..9839
-----------------
DNA (624bp)
protein (208aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4598_15
unknown

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comp(9827..10069)
-----------------
DNA (243bp)
protein (81aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4598_16
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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comp(10115..12322)
-----------------
DNA (2208bp)
protein (736aa)
Elongation factor 2 n=6 Tax=Methanocaldococcus RepID=EF2_METJA id=5103761 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
translation elongation factor aEF-2; K03234 elongation factor 2 Tax=RBG_16_Micrarchaeota_49_10_curated
Elongation factor 2
rifcsplowo2_01_scaffold_4598_17
AR5, Aenigmarchaeota, DPANN, Archaea

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12522..13217
-----------------
DNA (696bp)
protein (232aa)
hypothetical protein id=18248840 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
hypothetical protein Tax=AR5
rifcsplowo2_01_scaffold_4598_18
CG_Pacearch_04, Pacearchaeota, Archaea

Not on your lists

13251..13724
-----------------
DNA (474bp)
protein (158aa)
nuclease (SNase-like) Tax=CG_Pacearch_04
nuclease (SNase-like) id=5044609 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
nuclease (SNase domain protein)
rifcsplowo2_01_scaffold_4598_19
Methanobacterium paludis, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

13758..14732
-----------------
DNA (975bp)
protein (325aa)
Putative uncharacterized protein n=1 Tax=Methanobacterium sp. (strain SWAN-1) RepID=F6D2K0_METSW
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG17934.1}; TaxID=868131 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacter
rifcsplowo2_01_scaffold_4598_20
R_SM2F11_45_18, SM2F11, Bacteria

Not on your lists

14760..15470
-----------------
DNA (711bp)
protein (237aa)
LmbE family protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TU34_9CHLR
LmbE-like protein Tax=RIFCSPHIGHO2_01_FULL_SM2F11_45_18_curated
LmbE family protein
rifcsplowo2_01_scaffold_4598_21
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists


comp(15555..16268)
-----------------
DNA (714bp)
protein (238aa)
30S ribosomal protein S7 n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RS7_NANEQ id=5103767 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
30S ribosomal protein S7P; K02992 small subunit ribosomal protein S7 Tax=CG_Aenigma_01
30S ribosomal protein S7
rifcsplowo2_01_scaffold_4598_22
Thermococcus onnurineus, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists


comp(16386..16874)
-----------------
DNA (489bp)
protein (163aa)
30S ribosomal protein S12 n=1 Tax=Thermococcus onnurineus (strain NA1) RepID=B6YT20_THEON
rps12P; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU004490}; TaxID=523850 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;"
rifcsplowo2_01_scaffold_4598_23
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

comp(17141..17545)
-----------------
DNA (405bp)
protein (135aa)
NusA family KH domain protein n=1 Tax=Archaeoglobus profundus (strain DSM 5631 / JCM 9629 / NBRC 100127 / Av18) RepID=D2RIB7_ARCPA
NusA family KH domain protein; K02600 N utilization substance protein A Tax=CG_Aenigma_01
transcription elongation factor NusA-like protein
rifcsplowo2_01_scaffold_4598_24
unknown

Not on your lists

comp(17557..17802)
-----------------
DNA (246bp)
protein (82aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4598_25
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

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comp(17989..19116)
-----------------
DNA (1128bp)
protein (376aa)
DNA-directed RNA polymerase, subunit A''; K03042 DNA-directed RNA polymerase subunit A" [EC:2.7.7.6] Tax=RBG_16_Micrarchaeota_36_9_curated
DNA-directed RNA polymerase, subunit a' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit A'' n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYR7_METFV
rifcsplowo2_01_scaffold_4598_26
unknown

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comp(19119..19322)
-----------------
DNA (204bp)
protein (68aa)

This feature has no annotations

rifcsplowo2_01_scaffold_4598_27
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

comp(19324..21813)
-----------------
DNA (2490bp)
protein (830aa)
DNA-directed RNA polymerase, subunit a' (EC:2.7.7.6)
DNA-directed RNA polymerase n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYR8_METFV
DNA-directed RNA polymerase, subunit A Tax=CG_Aenigma_01
rifcsplowo2_01_scaffold_4598_28
RBG_16_Micrarchaeota_36_9_curated, Micrarchaeota, Archaea

Not on your lists

comp(21819..24602)
-----------------
DNA (2784bp)
protein (928aa)
rpoB; DNA-directed RNA polymerase subunit B (EC:2.7.7.6); K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] Tax=RBG_16_Micrarchaeota_36_9_curated
DNA-directed RNA polymerase n=1 Tax=Methanobrevibacter sp. AbM4 RepID=R9SIG8_9EURY
rpoB; DNA-directed RNA polymerase subunit B RpoB
rifcsplowo2_01_scaffold_4598_29
RBG_16_Micrarchaeota_49_10_curated, Micrarchaeota, Archaea

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comp(24629..25111)
-----------------
DNA (483bp)
protein (161aa)
DNA-directed RNA polymerase subunit B (EC:2.7.7.6); K13798 DNA-directed RNA polymerase subunit B [EC:2.7.7.6] Tax=RBG_16_Micrarchaeota_49_10_curated
DNA-directed RNA polymerase subunit B n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VPV3_9EURY
DNA-directed RNA polymerase subunit beta''
rifcsplowo2_01_scaffold_4598_30
Caldisphaera lagunensis, Caldisphaera, Acidilobales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

comp(25163..25435)
-----------------
DNA (273bp)
protein (91aa)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; TaxID=1056495 species="Archaea; Crenarchaeota; Thermoprotei; Acidilobales; Caldi
DNA-directed RNA polymerase subunit H n=1 Tax=Caldisphaera lagunensis (strain DSM 15908 / JCM 11604 / IC-154) RepID=L0ACP5_CALLD
DNA-directed RNA polymerase, subunit H, RpoH/RPB5
Displaying items 1-30 of 56 in total

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