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rifcsplowo2_01_scaffold_28567

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_28567_1
unknown

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2..1366
DNA (1365bp) protein (455aa)

This feature has no annotations

rifcsplowo2_01_scaffold_28567_2

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1402..2016
DNA (615bp) protein (205aa)
Aspartate--tRNA ligase id=5799880 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Aspartate-tRNA ligase {ECO:0000313|EMBL:AJF61211.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
aspartyl-tRNA synthetase
rifcsplowo2_01_scaffold_28567_3

Not on your lists


1998..3167
DNA (1170bp) protein (390aa)
aspartyl-tRNA synthetase; K01876 aspartyl-tRNA synthetase [EC:6.1.1.12] id=5045287 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Aspartyl-tRNA synthetase {ECO:0000313|EMBL:KHO54494.1}; EC=6.1.1.12 {ECO:0000313|EMBL:KHO54494.1};; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
aspartyl-tRNA synthetase
rifcsplowo2_01_scaffold_28567_4
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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comp(3168..3818)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VUW5_9CYAN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFZ10970.1}; TaxID=179408 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Oscillatoria.;" source="Oscillatoria nigro-viridis PCC 711
rifcsplowo2_01_scaffold_28567_5
RBG_19FT_COMBO_Nitrospirae_42_15_curated, Nitrospirae, Bacteria

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comp(3796..4203)
DNA (408bp) protein (136aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3 4.1.2.25); K13940 dihydroneopterin aldolase / 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:4.1.
hypothetical protein n=1 Tax=Clostridium tyrobutyricum RepID=UPI0003685DA6
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
rifcsplowo2_01_scaffold_28567_6
R_Deltaproteobacteria_44_53, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4191..4544)
DNA (354bp) protein (118aa)
dihydroneopterin aldolase; K01633 dihydroneopterin aldolase [EC:4.1.2.25] Tax=RIFCSPHIGHO2_02_FULL_Deltaproteobacteria_44_53_curated
folB; dihydroneopterin aldolase (EC:4.1.2.25)
Dihydroneopterin aldolase n=1 Tax=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) RepID=Q3A9K5_CARHZ
rifcsplowo2_01_scaffold_28567_7
AR19, Pacearchaeaota, DPANN, Archaea

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4638..5387
DNA (750bp) protein (250aa)
transcriptional regulator TrmB Tax=AR19
transcriptional regulator TrmB id=5045774 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
transcriptional regulator TrmB
rifcsplowo2_01_scaffold_28567_8
unknown

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comp(5392..5646)
DNA (255bp) protein (85aa)

This feature has no annotations

rifcsplowo2_01_scaffold_28567_9
R_OD1_Yanofskybacteria_44_17, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(5798..6199)
DNA (402bp) protein (134aa)
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_17_curated
hypothetical protein id=6126 bin=ACD13 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=ACD13 organism_group=OP11 (Microgenomates) organism_desc=OP11
rifcsplowo2_01_scaffold_28567_10

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comp(6196..7071)
DNA (876bp) protein (292aa)
hypothetical protein
id=5045285 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54492.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
rifcsplowo2_01_scaffold_28567_11
unknown

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comp(7103..7465)
DNA (363bp) protein (121aa)

This feature has no annotations

rifcsplowo2_01_scaffold_28567_12
unknown

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7604..8272
DNA (669bp) protein (223aa)

This feature has no annotations

rifcsplowo2_01_scaffold_28567_13
AR18, Woesearchaeaota, DPANN, Archaea

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8273..8983
DNA (711bp) protein (237aa)
tRNA (adenine-n(1)-)-methyltransferase (EC:2.1.1.36); K07442 tRNA (adenine57-N1/adenine58-N1)-methyltransferase [EC:2.1.1.219 2.1.1.220] id=5045276 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
tRNA (adenine-n(1)-)-methyltransferase (EC:2.1.1.36); K07442 tRNA (adenine57-N1/adenine58-N1)-methyltransferase [EC:2.1.1.219 2.1.1.220] Tax=AR18
tRNA (Adenine-57, 58-N(1)-) methyltransferase
rifcsplowo2_01_scaffold_28567_14
Peregrinibacteria bacterium GW2011_GWC2_33_13, Peregrinibacteria, Bacteria

Not on your lists

comp(9046..10245)
DNA (1200bp) protein (400aa)
major facilitator superfamily permease id=5091216 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Major facilitator superfamily permease {ECO:0000313|EMBL:KKP39959.1}; TaxID=1619061 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWC2_33_13.;"
major facilitator superfamily protein
rifcsplowo2_01_scaffold_28567_15
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(10259..10762)
DNA (504bp) protein (168aa)
id=1984191 Tax=RBG_13_Pacearchaeota_36_9_curated
id=1984191 bin=GWD2_Clostridiales_32_19 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=GWD2_Clostridiales_32_19 organism_group=Firmicute organism_desc=a85
rifcsplowo2_01_scaffold_28567_16
Smithella sp. SC_K08D17, Smithella, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10902..11501
DNA (600bp) protein (200aa)
Uncharacterized protein n=1 Tax=uncultured Sulfuricurvum sp. RIFRC-1 RepID=K7SCP9_9HELI
DNA-binding protein {ECO:0000313|EMBL:KIE18615.1}; TaxID=1487949 species="Bacteria; Proteobacteria; Deltaproteobacteria; Syntrophobacterales; Syntrophaceae; Smithella.;" source="Smithella sp. SC_K08D1
hypothetical protein
rifcsplowo2_01_scaffold_28567_17

Not on your lists

11705..11905
DNA (201bp) protein (67aa)
Uncharacterized protein {ECO:0000313|EMBL:KHO53354.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
hypothetical protein id=5050685 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
hypothetical protein
rifcsplowo2_01_scaffold_28567_18

Not on your lists

12002..13846
DNA (1845bp) protein (615aa)
ATPase; K06865 ATPase id=5045271 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
ATPase {ECO:0000313|EMBL:KHO54478.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
hypothetical protein
rifcsplowo2_01_scaffold_28567_19

Not on your lists

comp(13847..14236)
DNA (390bp) protein (130aa)
hypothetical protein; K07163 id=5045269 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54476.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
Zn-ribbon containing protein
Displaying 19 items

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