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rifcsplowo2_01_scaffold_197

Search features with annotation key words

Displaying items 1-30 of 101 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_197_1

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334..891
DNA (558bp) protein (186aa)
tbpE; transcription factor; K03120 transcription initiation factor TFIID TATA-box-binding protein id=5046314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
TATA-box-binding protein {ECO:0000256|HAMAP-Rule:MF_00408, ECO:0000256|RuleBase:RU000523}; Box A-binding protein {ECO:0000256|HAMAP-Rule:MF_00408}; TATA sequence-binding protein {ECO:0000256|HAMAP-Rul
TATA-box-binding protein
rifcsplowo2_01_scaffold_197_2
CG_Woesearch_01, Woesearchaeota, Archaea

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937..2997
DNA (2061bp) protein (687aa)
MCM family protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] Tax=CG_Woesearch_01
mcm; DNA replication initiator protein; K10726 replicative DNA helicase Mcm [EC:3.6.4.-] id=5046315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA replication initiator Cdc21/Cdc54
rifcsplowo2_01_scaffold_197_3
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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3015..3644
DNA (630bp) protein (210aa)
Putative uncharacterized protein Tax=RBG_13_Woesearchaeota_36_6_curated
seg id=5041825 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_197_4
CG_Woesearch_01, Woesearchaeota, Archaea

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3692..4108
DNA (417bp) protein (139aa)
eIF2B; translation initiation factor aIF-2, beta subunit; K03238 translation initiation factor 2 subunit 2 Tax=CG_Woesearch_01
translation initiation factor 2 subunit beta (aeif-2b); K03238 translation initiation factor 2 subunit 2 id=5046336 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Translation initiation factor 2 subunit beta
rifcsplowo2_01_scaffold_197_5

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4110..4409
DNA (300bp) protein (100aa)
Uncharacterized protein id=5800099 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
Uncharacterized protein {ECO:0000313|EMBL:AJF61430.1}; TaxID=1579373 species="Archaea.;" source="archaeon GW2011_AR15.;"
hypothetical protein
rifcsplowo2_01_scaffold_197_6
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(4464..8066)
DNA (3603bp) protein (1201aa)
DNA polymerase II large subunit (EC:2.7.7.7); K02322 DNA polymerase II large subunit [EC:2.7.7.7] Tax=CG_Woesearch_01
Archaeal DNA polymerase II large subunit (EC:2.7.7.7)
DNA polymerase II large subunit id=5800100 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_197_7
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(8073..9680)
DNA (1608bp) protein (536aa)
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] Tax=CG_Woesearch_02
DNA polymerase II small subunit (EC:2.7.7.7); K02323 DNA polymerase II small subunit [EC:2.7.7.7] id=5046338 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsplowo2_01_scaffold_197_8
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(9698..10900)
DNA (1203bp) protein (401aa)
ORC1-type DNA replication protein n=1 Tax=Candidatus Nanosalina sp. J07AB43 RepID=G0QF40_9EURY id=5103158 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
cdc6; cell division control protein 6; K10725 archaeal cell division control protein 6 Tax=RBG_13_Woesearchaeota_36_6_curated
ORC1-type DNA replication protein
rifcsplowo2_01_scaffold_197_9
CG_Woesearch_01, Woesearchaeota, Archaea

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11181..11984
DNA (804bp) protein (268aa)
hypothetical protein Tax=CG_Woesearch_01
hypothetical protein id=5041817 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
hypothetical protein
rifcsplowo2_01_scaffold_197_10

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12092..12313
DNA (222bp) protein (74aa)
id=5046340 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46141.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsplowo2_01_scaffold_197_11

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comp(12290..12895)
DNA (606bp) protein (202aa)
transcription factor E; K03136 transcription initiation factor TFIIE subunit alpha id=5041815 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Transcription factor E {ECO:0000256|HAMAP-Rule:MF_01909, ECO:0000256|SAAS:SAAS00008967}; Short=TFE {ECO:0000256|HAMAP-Rule:MF_01909};; TFIIE subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01909}; Tr
Transcription factor E
rifcsplowo2_01_scaffold_197_12
CG_Woesearch_01, Woesearchaeota, Archaea

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comp(12930..13328)
DNA (399bp) protein (133aa)
resolvase, holliday junction-type; K03552 holliday junction resolvase, archaea type Tax=CG_Woesearch_01
Holliday junction-type resolvase; K03552 holliday junction resolvase, archaea type id=5041814 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Resolvase, Holliday junction-type
rifcsplowo2_01_scaffold_197_13
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(13331..14230)
DNA (900bp) protein (300aa)
rnz; ribonuclease Z (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11] Tax=CG_Pacearch_04
rnz; ribonuclease Z Rnz (EC:3.1.26.11); K00784 ribonuclease Z [EC:3.1.26.11] id=5046343 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
RNAse Z
rifcsplowo2_01_scaffold_197_14
CG_Woesearch_02, Woesearchaeota, Archaea

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14352..14939
DNA (588bp) protein (196aa)
tRNA-splicing endonuclease subunit alpha (EC:3.1.27.9); K01170 tRNA-intron endonuclease, archaea type [EC:3.1.27.9] Tax=CG_Woesearch_02
tRNA-splicing endonuclease subunit alpha (EC:3.1.27.9); K01170 tRNA-intron endonuclease, archaea type [EC:3.1.27.9] id=5046344 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
tRNA-intron endonuclease
rifcsplowo2_01_scaffold_197_15
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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14995..15960
DNA (966bp) protein (322aa)
hypothetical protein
id=5046345 Tax=RBG_13_Woesearchaeota_36_6_curated
id=5103053 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsplowo2_01_scaffold_197_16

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15998..17029
DNA (1032bp) protein (344aa)
rad2; flap endonuclease-1; K04799 flap endonuclease-1 [EC:3.-.-.-] id=5046346 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Flap endonuclease 1 {ECO:0000256|HAMAP-Rule:MF_00614}; Short=FEN-1 {ECO:0000256|HAMAP-Rule:MF_00614};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00614};; Flap structure-specific endonuclease 1 {ECO:000025
flap endonuclease-1
rifcsplowo2_01_scaffold_197_17
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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17026..17811
DNA (786bp) protein (262aa)
hypothetical protein; K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] Tax=RBG_13_Woesearchaeota_36_6_curated
tRNA (Guanine37-N1) -methyltransferase; K15429 tRNA (guanine37-N1)-methyltransferase [EC:2.1.1.228] id=5046348 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsplowo2_01_scaffold_197_18
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(18047..19195)
DNA (1149bp) protein (383aa)
proteasome-activating nucleotidase; K03420 proteasome regulatory subunit Tax=RBG_13_Woesearchaeota_36_6_curated
NEQ186 id=5800112 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
proteasome-activating nucleotidase
rifcsplowo2_01_scaffold_197_19
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(19208..20566)
DNA (1359bp) protein (453aa)
TldE-like protein n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LIN5_THEBM
hypothetical protein; K03592 PmbA protein Tax=CG_Pacearch_04
TldE-like protein
rifcsplowo2_01_scaffold_197_20
CG_Pacearch_04, Pacearchaeota, Archaea

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comp(20580..22031)
DNA (1452bp) protein (484aa)
Peptidase U62 modulator of DNA gyrase n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZN48_THELI
hypothetical protein; K03568 TldD protein Tax=CG_Pacearch_04
peptidase U62 modulator of DNA gyrase
rifcsplowo2_01_scaffold_197_21

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comp(22090..23166)
DNA (1077bp) protein (359aa)
tRNA synthetase class I family protein; K01866 tyrosyl-tRNA synthetase [EC:6.1.1.1] id=5041802 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Tyrosine--tRNA ligase {ECO:0000256|SAAS:SAAS00011232}; EC=6.1.1.1 {ECO:0000256|SAAS:SAAS00011232};; TaxID=1579366 species="Archaea.;" source="archaeon GW2011_AR4.;"
tyrosyl-tRNA synthetase (EC:6.1.1.1)
rifcsplowo2_01_scaffold_197_22
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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23482..24297
DNA (816bp) protein (272aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000364BC2C
recombinase B; K07464 putative RecB family exonuclease Tax=RBG_13_Woesearchaeota_36_6_curated
CRISPR-associated protein Cas4
rifcsplowo2_01_scaffold_197_23
CG_Woesearch_02, Woesearchaeota, Archaea

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24385..24648
DNA (264bp) protein (88aa)
hypothetical protein Tax=CG_Woesearch_02
hypothetical protein id=5046354 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
PRC-barrel protein
rifcsplowo2_01_scaffold_197_24
CG_Woesearch_02, Woesearchaeota, Archaea

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24757..25716
DNA (960bp) protein (320aa)
rfc; replication factor C small subunit; K04801 replication factor C small subunit Tax=CG_Woesearch_02
rfc; replication factor C small subunit; K04801 replication factor C small subunit id=5046355 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Replication factor C small subunit
rifcsplowo2_01_scaffold_197_25
Dictyostelium discoideum, Dictyostelium, Dictyosteliida, Eukaryota

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25796..28294
DNA (2499bp) protein (833aa)
Zipper-like domain-containing protein n=2 Tax=Dictyostelium discoideum RepID=Q54L07_DICDI
zipA; zipper-like domain-containing protein
Uncharacterized protein {ECO:0000313|EMBL:EAL63944.1}; TaxID=44689 species="Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium.;" source="Dictyostelium discoideum (Slime mold).;"
rifcsplowo2_01_scaffold_197_26
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(28445..29581)
DNA (1137bp) protein (379aa)
id=5800187 Tax=CG_Woesearch_02
rifcsplowo2_01_scaffold_197_27
unknown

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comp(29635..30738)
DNA (1104bp) protein (368aa)

This feature has no annotations

rifcsplowo2_01_scaffold_197_28
unknown

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30846..32510
DNA (1665bp) protein (555aa)

This feature has no annotations

rifcsplowo2_01_scaffold_197_29
AR15, Woesearchaeaota, DPANN, Archaea

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comp(32513..33595)
DNA (1083bp) protein (361aa)
PROKAR_LIPOPROTEIN id=5800185 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
PROKAR_LIPOPROTEIN Tax=AR15
rifcsplowo2_01_scaffold_197_30
unknown

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comp(33573..35618)
DNA (2046bp) protein (682aa)

This feature has no annotations

Displaying items 1-30 of 101 in total

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