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rifcsplowo2_01_scaffold_2427

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_2427_1
CG_Woesearch_02, Woesearchaeota, Archaea

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2..778
-----------------
DNA (777bp)
protein (259aa)
Integrase catalytic region n=1 Tax=Archaeoglobus veneficus (strain DSM 11195 / SNP6) RepID=F2KMT1_ARCVS
integrase catalytic subunit Tax=CG_Woesearch_02
integrase catalytic subunit
rifcsplowo2_01_scaffold_2427_2

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1048..2289
-----------------
DNA (1242bp)
protein (414aa)
putative bi-functional transferase/deacetylase id=5044969 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO54569.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
Glycosyltransferase involved in cell wall biogenesis
rifcsplowo2_01_scaffold_2427_3
Altiarchaeum hamiconexum, Altiarchaeum, Altiarchaeales, Euryarchaeota, Archaea

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2280..2963
-----------------
DNA (684bp)
protein (228aa)
Thioredoxin-like fold Tax=Altiarchaeum hamiconexum
rifcsplowo2_01_scaffold_2427_4

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3017..4396
-----------------
DNA (1380bp)
protein (460aa)
id=5050185 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Dolichyl-phosphate-mannose-protein mannosyltransferase {ECO:0000313|EMBL:KHO53047.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein
rifcsplowo2_01_scaffold_2427_5
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(4397..4870)
-----------------
DNA (474bp)
protein (158aa)
helix-turn-helix domain-containing protein; K03627 putative transcription factor Tax=CG_Woesearch_02
transcriptional regulator; K03627 putative transcription factor id=5050186 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
helix-turn-helix protein
rifcsplowo2_01_scaffold_2427_6
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(4863..5267)
-----------------
DNA (405bp)
protein (135aa)
Putative uncharacterized protein n=1 Tax=Spirochaeta thermophila (strain ATCC 700085 / DSM 6578 / Z-1203) RepID=G0GF61_SPITZ
automatic annotation Tax=CG_Woesearch_02
hypothetical protein
rifcsplowo2_01_scaffold_2427_7
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

5322..5861
-----------------
DNA (540bp)
protein (180aa)
adenylate kinase (EC:2.7.4.3) id=5045728 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
adenylate kinase Tax=CG_Woesearch_02
Adenylate kinase
rifcsplowo2_01_scaffold_2427_8
RBG_13_Bathyarchaeota_38_9_curated, Bathyarchaeota, Archaea

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5862..7013
-----------------
DNA (1152bp)
protein (384aa)
class I and II aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1] id=24608227 bin=RAAC11 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RAAC11 organism_group=Unknown_CP
aspartate aminotransferase (EC:2.6.1.1)
aspartate/tyrosine/aromatic aminotransferase Tax=RBG_13_Bathyarchaeota_38_9_curated
rifcsplowo2_01_scaffold_2427_9
CSP1_2_Dadabacteria, Dadabacteria, Bacteria

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7067..7435
-----------------
DNA (369bp)
protein (123aa)
hypothetical protein; K09143 hypothetical protein id=14426030 bin=bin1_lowGC species=RBG2 genus=RBG2 taxon_order=RBG2 taxon_class=RBG2 phylum=Chloroflexi tax=bin1_lowGC organism_group=Unknown_CP
hypothetical protein; K09143 hypothetical protein Tax=CSP1_2_Dadabacteria
hypothetical protein
rifcsplowo2_01_scaffold_2427_10
unknown

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comp(7439..7867)
-----------------
DNA (429bp)
protein (143aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2427_11

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7950..9065
-----------------
DNA (1116bp)
protein (372aa)
Uncharacterized protein n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=Q9V0U1_PYRAB
Uncharacterized protein {ECO:0000313|EMBL:KHO50269.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein
rifcsplowo2_01_scaffold_2427_12
BJP_08E140C01_10KDA_Methanosarcinales_43_67, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(9315..9701)
-----------------
DNA (387bp)
protein (129aa)
hypothetical protein
Tax=BJP_08E140C01_10KDA_Methanosarcinales_43_67
rifcsplowo2_01_scaffold_2427_13
unknown

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comp(9701..9904)
-----------------
DNA (204bp)
protein (68aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2427_14
CG_Woesearch_02, Woesearchaeota, Archaea

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comp(9981..10781)
-----------------
DNA (801bp)
protein (267aa)
rfbM; mannose-1-phosphate guanylyltransferase (EC:2.7.7.13) Tax=CG_Woesearch_02
Nucleotidyl transferase id=5800118 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
nucleotidyl transferase
rifcsplowo2_01_scaffold_2427_15
CG_Omnitr_07, Omnitrophica, Bacteria

Not on your lists

10849..12150
-----------------
DNA (1302bp)
protein (434aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] Tax=CG_Omnitr_07
UDP-glucose 6-dehydrogenase id=1703685 bin=GWB2_CP_45_9 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=TA06 tax=GWB2_CP_45_9 organism_group=Unknown_CP organism_desc=Sibling to OP3 based on rpS3
ugd; UDP-glucose 6-dehydrogenase
rifcsplowo2_01_scaffold_2427_16
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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12151..12888
-----------------
DNA (738bp)
protein (246aa)
gcd1; glucose-1-phosphate thymidylyltransferase (EC:2.7.7.24)
hypothetical protein n=1 Tax=Gracilibacillus lacisalsi RepID=UPI0003654498
Nucleotidyl transferase {ECO:0000313|EMBL:KKR79111.1}; TaxID=1618734 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWA2_40_9.;"
rifcsplowo2_01_scaffold_2427_17
AR11, Woesearchaeaota, DPANN, Archaea

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12930..13859
-----------------
DNA (930bp)
protein (310aa)
NAD-dependent epimerase/dehydratase family protein; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=AR11
NAD-dependent epimerase/dehydratase family protein n=1 Tax=Caldilinea aerophila (strain DSM 14535 / JCM 11387 / NBRC 104270 / STL-6-O1) RepID=I0I2V1_CALAS
NAD-dependent epimerase/dehydratase family protein
rifcsplowo2_01_scaffold_2427_18
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(13837..15300)
-----------------
DNA (1464bp)
protein (488aa)
Polysaccharide biosynthesis protein n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2R9B7_METFO
lipopolysaccharide O-side chain biosynthesis protein Tax=AR11
polysaccharide biosynthesis protein
rifcsplowo2_01_scaffold_2427_19

Not on your lists

15485..16687
-----------------
DNA (1203bp)
protein (401aa)
Putative glycosyltransferase n=1 Tax=Methanocella paludicola (strain DSM 17711 / JCM 13418 / NBRC 101707 / SANAE) RepID=D1YWZ3_METPS
Glycosyl transferase group 1 {ECO:0000313|EMBL:KHO53838.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
putative glycosyltransferase
rifcsplowo2_01_scaffold_2427_20
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

16684..17724
-----------------
DNA (1041bp)
protein (347aa)
hypothetical protein Tax=AR11
rifcsplowo2_01_scaffold_2427_21
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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comp(17725..18576)
-----------------
DNA (852bp)
protein (284aa)
hypothetical protein n=1 Tax=Omnitrophica bacterium SCGC AAA257-O07 RepID=UPI0003B31E18
CDP-alcohol phosphatidyltransferase family Tax=GWA2_OD1_40_9
hypothetical protein
rifcsplowo2_01_scaffold_2427_22

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comp(18608..19159)
-----------------
DNA (552bp)
protein (184aa)
helix-turn-helix domain-containing protein id=5045919 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Helix-turn-helix protein {ECO:0000313|EMBL:KHO46264.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsplowo2_01_scaffold_2427_23
RBG_16_Caldithrix_48_16_curated, Caldithrix, Bacteria

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comp(19191..20051)
-----------------
DNA (861bp)
protein (287aa)
Putative metal-dependent phosphoesterase, PHP family n=1 Tax=Clostridium clariflavum (strain DSM 19732 / NBRC 101661 / EBR45) RepID=G8LUP7_CLOCD
hypothetical protein; K07053 Tax=RBG_16_Caldithrix_48_16_curated
putative metal-dependent phosphoesterase, PHP family
rifcsplowo2_01_scaffold_2427_24

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comp(20054..21421)
-----------------
DNA (1368bp)
protein (456aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=1456268 species="Archaea; Thauma
proS; proline--tRNA ligase (EC:6.1.1.15)
Proline--tRNA ligase id=4926769 bin=GWC2_CPR2_39_35 species=unknown genus=Myroides taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWC2_CPR2_39_35 organism_group=CPR2 organism_desc=Candidate for curation
rifcsplowo2_01_scaffold_2427_25
Methanobacterium formicicum, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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comp(21432..22502)
-----------------
DNA (1071bp)
protein (357aa)
DNA polymerase beta domain-containing protein n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2R284_METFO
DNA polymerase beta domain-containing protein {ECO:0000313|EMBL:EKF86638.1}; TaxID=1204725 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;
DNA polymerase subunit beta
rifcsplowo2_01_scaffold_2427_26
unknown

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22619..23056
-----------------
DNA (438bp)
protein (146aa)

This feature has no annotations

rifcsplowo2_01_scaffold_2427_27
CG_Pacearch_02, Pacearchaeota, Archaea

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comp(23060..24307)
-----------------
DNA (1248bp)
protein (416aa)
Sodium/hydrogen exchanger n=4 Tax=Pelosinus fermentans RepID=I8RFY3_9FIRM
sodium/hydrogen exchanger Tax=CG_Pacearch_02
sodium/hydrogen exchanger
rifcsplowo2_01_scaffold_2427_28
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

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comp(24308..25393)
-----------------
DNA (1086bp)
protein (362aa)
Uncharacterized protein n=1 Tax=Acinetobacter sp. NIPH 809 RepID=N8QFA2_9GAMM
Predicted glycosyl transferase, group 1 Tax=GWA2_OD1_40_9
group 1 glycosyl transferase
rifcsplowo2_01_scaffold_2427_29
GWA2_OD1_40_9, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(25390..26364)
-----------------
DNA (975bp)
protein (325aa)
yfnG; sporulation putative NAD-dependent epimerase/dehydratase YfnG; K01709 CDP-glucose 4,6-dehydratase [EC:4.2.1.45] id=5241083 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
dTDP-glucose 4,6-dehydratase Tax=GWA2_OD1_40_9
hypothetical protein
rifcsplowo2_01_scaffold_2427_30

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comp(26352..27041)
-----------------
DNA (690bp)
protein (230aa)
glucose-1-phosphate cytidylyltransferase (EC:2.7.7.33)
glucose-1-phosphate cytidylyltransferase (EC:2.7.7.33); K00978 glucose-1-phosphate cytidylyltransferase [EC:2.7.7.33] id=5241082 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Glucose-1-phosphate cytidylyltransferase {ECO:0000313|EMBL:AJF60073.1}; EC=2.7.7.33 {ECO:0000313|EMBL:AJF60073.1};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
Displaying items 1-30 of 32 in total

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