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rifcsplowo2_01_scaffold_1209

Search features with annotation key words

Displaying items 1-30 of 53 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_1209_1

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1..642
-----------------
DNA (642bp)
protein (214aa)
Uncharacterized protein {ECO:0000313|EMBL:KKS82845.1}; TaxID=1619011 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Wolfebacteria) bacterium GW2011_GWC1_43_10.;"
hypothetical protein id=16341 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
rifcsplowo2_01_scaffold_1209_2

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comp(684..2606)
-----------------
DNA (1923bp)
protein (641aa)
Amino acid permease-associated region {ECO:0000313|EMBL:KHO52939.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
integral membrane transport protein id=18248244 bin=AR5_curated_draft species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=AR5_curated_draft organism_group=Archaeon organism_desc=Curated draft
amino acid permease-associated protein
rifcsplowo2_01_scaffold_1209_3

Not on your lists


2749..3456
-----------------
DNA (708bp)
protein (236aa)
dph2; 2-(3-amino-3-carboxypropyl)histidine synthase (EC:2.5.1.108)
Diphthamide synthase subunit {ECO:0000313|EMBL:KHO51464.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
hypothetical protein; K07561 diphthamide synthase subunit DPH2 id=5044025 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_1209_4
unknown

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comp(3457..3720)
-----------------
DNA (264bp)
protein (88aa)

This feature has no annotations

rifcsplowo2_01_scaffold_1209_5
AR11, Woesearchaeaota, DPANN, Archaea

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comp(4018..5091)
-----------------
DNA (1074bp)
protein (358aa)
hypothetical protein Tax=AR11
putative hemolysin id=5045996 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_1209_6

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comp(5134..5613)
-----------------
DNA (480bp)
protein (160aa)
hypothetical protein id=5048249 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO53967.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
hypothetical protein
rifcsplowo2_01_scaffold_1209_7
GWF2_Planctomycetes_50_10, GWF2_Planctomycetes_50_10, GWF2_Planctomycetes_50_10, GWF2_Planctomycetes_50_10, Planctomycetes, Bacteria

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5660..6343
-----------------
DNA (684bp)
protein (228aa)
Glutamate--tRNA ligase id=4560501 bin=GWF2_Planctomycetes_50_10 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
Glutamate--tRNA ligase id=4560501 bin=GWF2_Planctomycetes_50_10 species=Planctomyces maris genus=Planctomyces taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWF2_Planctomycetes_50_10 organism_group=Planctomycetes
rifcsplowo2_01_scaffold_1209_8

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6340..6762
-----------------
DNA (423bp)
protein (141aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO52764.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
id=5799548 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_1209_9
CG_Aenigma_01, Aenigmaarchaeota, Archaea

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6764..7015
-----------------
DNA (252bp)
protein (84aa)
Uncharacterized protein n=1 Tax=uncultured organism RepID=M1Q1Y9_9ZZZZ
hypothetical protein Tax=CG_Aenigma_01
hypothetical protein
rifcsplowo2_01_scaffold_1209_10

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comp(7017..7622)
-----------------
DNA (606bp)
protein (202aa)
superoxide dismutase, Fe-Mn family (EC:1.15.1.1)
Superoxide dismutase (EC:1.15.1.1); K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] id=5240906 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
Superoxide dismutase {ECO:0000256|RuleBase:RU000414}; EC=1.15.1.1 {ECO:0000256|RuleBase:RU000414};; TaxID=1579370 species="Archaea.;" source="archaeon GW2011_AR10.;"
rifcsplowo2_01_scaffold_1209_11
unknown

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7773..8189
-----------------
DNA (417bp)
protein (139aa)

This feature has no annotations

rifcsplowo2_01_scaffold_1209_12
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(8208..9053)
-----------------
DNA (846bp)
protein (282aa)
Transposase IS3 family protein, putative integrase n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BTW8_METCG
transposase IS3 family protein integrase
Transposase IS3 family protein, putative integrase {ECO:0000313|EMBL:AEB67001.1}; TaxID=990316 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" so
rifcsplowo2_01_scaffold_1209_13
Methanosaeta concilii, Methanosaeta, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

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comp(9050..9367)
-----------------
DNA (318bp)
protein (106aa)
IS3/IS66 family element, Orf1 protein n=1 Tax=Methanosaeta concilii (strain ATCC 5969 / DSM 3671 / JCM 10134 / NBRC 103675 / OCM 69 / GP-6) RepID=F4BVI9_METCG
IS3/IS66 family element, Orf1 protein
IS3/IS66 family element, Orf1 protein {ECO:0000313|EMBL:AEB68423.1}; TaxID=990316 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosaetaceae; Methanosaeta.;" source="Methano
rifcsplowo2_01_scaffold_1209_14
unknown

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comp(9433..9576)
-----------------
DNA (144bp)
protein (48aa)

This feature has no annotations

rifcsplowo2_01_scaffold_1209_15
unknown

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9744..10739
-----------------
DNA (996bp)
protein (332aa)

This feature has no annotations

rifcsplowo2_01_scaffold_1209_16

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10758..11126
-----------------
DNA (369bp)
protein (123aa)
id=5047509 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45718.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsplowo2_01_scaffold_1209_17
unknown

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comp(11163..11300)
-----------------
DNA (138bp)
protein (46aa)

This feature has no annotations

rifcsplowo2_01_scaffold_1209_18
unknown

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comp(11899..12063)
-----------------
DNA (165bp)
protein (55aa)

This feature has no annotations

rifcsplowo2_01_scaffold_1209_19
R_Nitrospirae_40_19, Nitrospirae, Bacteria

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comp(12180..13268)
-----------------
DNA (1089bp)
protein (363aa)
DNA topoisomerase VI subunit A (EC:5.99.1.3); K03166 DNA topoisomerase VI subunit A [EC:5.99.1.3] Tax=RIFCSPHIGHO2_02_FULL_Nitrospirae_40_19_curated
DNA topoisomerase (ATP-hydrolyzing) n=4 Tax=Candidatus Parvarchaeum RepID=D2EGK9_9EURY id=5103234 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
DNA topoisomerase ATP-hydrolyzing
rifcsplowo2_01_scaffold_1209_20

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comp(13362..15020)
-----------------
DNA (1659bp)
protein (553aa)
DNA topoisomerase VI subunit B {ECO:0000313|EMBL:KHO50506.1}; EC=5.99.1.3 {ECO:0000313|EMBL:KHO50506.1};; Flags: Fragment;; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
top6B; DNA topoisomerase VI subunit B (EC:5.99.1.3); K03167 DNA topoisomerase VI subunit B [EC:5.99.1.3] id=5048468 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
DNA topoisomerase VI, subunit B
rifcsplowo2_01_scaffold_1209_21
unknown

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comp(15218..15589)
-----------------
DNA (372bp)
protein (124aa)

This feature has no annotations

rifcsplowo2_01_scaffold_1209_22

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comp(15671..16216)
-----------------
DNA (546bp)
protein (182aa)
Ribosomal RNA assembly protein {ECO:0000313|EMBL:KHO50505.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
KH domain protein; K06961 ribosomal RNA assembly protein id=5048469 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
putative RNA-processing protein
rifcsplowo2_01_scaffold_1209_23

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comp(16250..17002)
-----------------
DNA (753bp)
protein (251aa)
Putative serine/threonine protein kinase (RIOK1) {ECO:0000313|EMBL:AIF00782.1}; EC=2.7.11.1 {ECO:0000313|EMBL:AIF00782.1};; TaxID=1457870 species="Archaea; Euryarchaeota; environmental samples.;" sour
Non-specific serine/threonine protein kinase; K07178 RIO kinase 1 [EC:2.7.11.1] id=5048470 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
serine/threonine protein kinase RIO1 family
rifcsplowo2_01_scaffold_1209_24
unknown

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comp(17044..17457)
-----------------
DNA (414bp)
protein (138aa)

This feature has no annotations

rifcsplowo2_01_scaffold_1209_25
AR11, Woesearchaeaota, DPANN, Archaea

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18069..19331
-----------------
DNA (1263bp)
protein (421aa)
DNA primase Tax=AR11
DNA primase id=5048471 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsplowo2_01_scaffold_1209_26
GWF2_OP11_38_6, Daviesbacteria, Microgenomates, Bacteria

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comp(19361..20473)
-----------------
DNA (1113bp)
protein (371aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ76423.1}; TaxID=1618432 species="Bacteria; Microgenomates.;" source="Microgenomates (Daviesbacteria) bacterium GW2011_GWF2_38_6.;"
rifcsplowo2_01_scaffold_1209_27
AR11, Woesearchaeaota, DPANN, Archaea

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20586..21902
-----------------
DNA (1317bp)
protein (439aa)
nucleotidyltransferase; K06915 Tax=AR11
hypothetical protein; K06915 id=5048473 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
hypothetical protein
rifcsplowo2_01_scaffold_1209_28
Marinobacter sp. EN3, Marinobacter, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(21908..22660)
-----------------
DNA (753bp)
protein (251aa)
Sulfonate ABC transporter ATP-binding lipoprotein n=1 Tax=Marinobacter sp. EN3 RepID=U7GTZ6_9ALTE
Sulfonate ABC transporter ATP-binding lipoprotein {ECO:0000313|EMBL:ERS00500.1}; TaxID=1397533 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Marinobacter.;
sulfonate ABC transporter ATP-binding protein
rifcsplowo2_01_scaffold_1209_29
Parcubacteria bacterium GW2011_GWF1_52_5, Parcubacteria, Bacteria

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comp(22662..23420)
-----------------
DNA (759bp)
protein (253aa)
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component n=1 Tax=Bradyrhizobium sp. WSM1253 RepID=I2QRU2_9BRAD
Putative ABC transporter permease protein {ECO:0000313|EMBL:KKW27048.1}; TaxID=1618959 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWF1_52_5.;"
ABC transporter permease
rifcsplowo2_01_scaffold_1209_30
R_OP11_Gottesmanbacteria_40_13, Gottesmanbacteria, Microgenomates, Bacteria

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comp(23560..24549)
-----------------
DNA (990bp)
protein (330aa)
nitrate ABC transporter substrate-binding protein n=1 Tax=Acidovorax radicis RepID=UPI00023782BC
ABC transporter substrate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein Tax=RIFCSPHIGHO2_02_FULL_OP11_Gottesmanbacteria_40_13_curated
nitrate/sulfonate/bicarbonate ABC transporter periplasmic components-like protein
Displaying items 1-30 of 53 in total

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