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rifcsplowo2_01_scaffold_17109

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_17109_1
Clostridium intestinale, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..439
-----------------
DNA (438bp)
protein (146aa)
Cytochrome c biogenesis protein transmembrane region n=1 Tax=Clostridium intestinale URNW RepID=U2Q420_9CLOT
Cytochrome c biogenesis protein transmembrane region {ECO:0000313|EMBL:ERK30844.1}; TaxID=1294142 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clost
cytochrome c assembly protein (thioredoxin)
rifcsplowo2_01_scaffold_17109_2

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comp(415..1920)
-----------------
DNA (1506bp)
protein (502aa)
glucose-6-phosphate 1-dehydrogenase (EC:1.1.1.49)
Glucose-6-phosphate 1-dehydrogenase id=2823121 bin=GWC1_KAZAN_52_13 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC1_KAZAN_52_13 organism_group=Kazan
Glucose-6-phosphate 1-dehydrogenase {ECO:0000313|EMBL:KKW24904.1}; TaxID=1620413 species="Bacteria.;" source="bacterium GW2011_GWC1_52_13.;"
rifcsplowo2_01_scaffold_17109_3
RLO_Nitrospinae_39_16, Nitrospinae, Bacteria

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2025..3128
-----------------
DNA (1104bp)
protein (368aa)
FolC bifunctional protein; K11754 dihydrofolate synthase / folylpolyglutamate synthase [EC:6.3.2.12 6.3.2.17] Tax=RifCSPlowO2_12_Nitrospinae_39_16_curated
FolC bifunctional protein id=4010270 bin=PER_GWC2_41_7 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=PER_GWC2_41_7 organism_group=PER (Peregrinibacteria)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase
rifcsplowo2_01_scaffold_17109_4
unknown

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comp(3125..3673)
-----------------
DNA (549bp)
protein (183aa)

This feature has no annotations

rifcsplowo2_01_scaffold_17109_5

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3791..4705
-----------------
DNA (915bp)
protein (305aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formyl
Phosphoribosylformylglycinamidine synthase II; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] id=5045878 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
purL; phosphoribosylformylglycinamidine synthase II
rifcsplowo2_01_scaffold_17109_6

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4668..6035
-----------------
DNA (1368bp)
protein (456aa)
Phosphoribosylformylglycinamidine synthase subunit PurL {ECO:0000256|HAMAP-Rule:MF_00420}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00420};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00420};; Formyl
Phosphoribosylformylglycinamidine synthase II; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] id=5045878 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
purL; phosphoribosylformylglycinamidine synthase II
rifcsplowo2_01_scaffold_17109_7

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6080..6934
-----------------
DNA (855bp)
protein (285aa)
phosphoribosylformylglycinamidine synthase I; K01952 phosphoribosylformylglycinamidine synthase [EC:6.3.5.3] id=5045877 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Phosphoribosylformylglycinamidine synthase subunit PurQ {ECO:0000256|HAMAP-Rule:MF_00421}; Short=FGAM synthase {ECO:0000256|HAMAP-Rule:MF_00421};; EC=6.3.5.3 {ECO:0000256|HAMAP-Rule:MF_00421};; Formyl
purQ; phosphoribosylformylglycinamidine synthase I (EC:6.3.5.3)
rifcsplowo2_01_scaffold_17109_8
unknown

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6935..7237
-----------------
DNA (303bp)
protein (101aa)

This feature has no annotations

rifcsplowo2_01_scaffold_17109_9

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7243..7701
-----------------
DNA (459bp)
protein (153aa)
id=5045876 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46489.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
rifcsplowo2_01_scaffold_17109_10

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7711..8478
-----------------
DNA (768bp)
protein (256aa)
N5-carboxyaminoimidazole ribonucleotide mutase {ECO:0000256|HAMAP-Rule:MF_01929}; Short=N5-CAIR mutase {ECO:0000256|HAMAP-Rule:MF_01929};; EC=5.4.99.18 {ECO:0000256|HAMAP-Rule:MF_01929};; 5-(carboxyam
purE; putative phosphoribosylaminoimidazole carboxylase catalytic subunit (EC:4.1.1.21); K01588 5-(carboxyamino)imidazole ribonucleotide mutase [EC:5.4.99.18] id=5045875 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
5-(carboxyamino)imidazole ribonucleotide mutase (EC:4.1.1.21 5.4.99.18)
rifcsplowo2_01_scaffold_17109_11
AR11, Woesearchaeaota, DPANN, Archaea

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8698..9777
-----------------
DNA (1080bp)
protein (360aa)
purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] Tax=AR11
purC; phosphoribosylaminoimidazolesuccinocarboxamide synthase (EC:6.3.2.6); K01923 phosphoribosylaminoimidazole-succinocarboxamide synthase [EC:6.3.2.6] id=5802329 bin=PER_GWA2_38_35 species=PER_GWA2_38_35 genus=PER_GWA2_38_35 taxon_order=PER_GWA2_38_35 taxon_class=PER_GWA2_38_35 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
purC; phosphoribosylaminoimidazole-succinocarboxamide synthase (EC:6.3.2.6)
rifcsplowo2_01_scaffold_17109_12
unknown

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comp(9788..10168)
-----------------
DNA (381bp)
protein (127aa)

This feature has no annotations

rifcsplowo2_01_scaffold_17109_13

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10287..11051
-----------------
DNA (765bp)
protein (255aa)
inositol-phosphate phosphatase (EC:3.1.3.25)
Inositol-phosphate phosphatase n=1 Tax=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) RepID=B8E151_DICTD
Inositol monophosphatase family protein {ECO:0000313|EMBL:KHO51558.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
rifcsplowo2_01_scaffold_17109_14
RLO_Nitrospinae_39_15, Nitrospinae, Bacteria

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11048..11791
-----------------
DNA (744bp)
protein (248aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YBT9_9DELT
beta-lactamase domain-containing protein Tax=RifCSPlowO2_12_Nitrospinae_39_15_curated
beta-lactamase domain-containing protein
rifcsplowo2_01_scaffold_17109_15
AR11, Woesearchaeaota, DPANN, Archaea

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12105..13775
-----------------
DNA (1671bp)
protein (557aa)
fumarate lyase; K01756 adenylosuccinate lyase [EC:4.3.2.2] id=5045869 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Fumarate lyase Tax=AR11
adenylosuccinate lyase
rifcsplowo2_01_scaffold_17109_16
Parcubacteria bacterium GW2011_GWA2_46_9, Parcubacteria, Bacteria

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13859..14440
-----------------
DNA (582bp)
protein (194aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU47675.1}; TaxID=1618838 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_46_9.;"
Uncharacterized protein (Fragment) id=5800258 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_17109_17
Methanosphaerula palustris, Methanosphaerula, Methanomicrobiales, Methanomicrobia, Euryarchaeota, Archaea

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comp(14419..14718)
-----------------
DNA (300bp)
protein (100aa)
Sodium/hydrogen exchanger n=1 Tax=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) RepID=B8GFM4_METPE
sodium/hydrogen exchanger
Sodium/hydrogen exchanger {ECO:0000313|EMBL:ACL16072.1}; TaxID=521011 species="Archaea; Euryarchaeota; Methanomicrobia; Methanomicrobiales; Methanoregulaceae; Methanosphaerula.;" source="Methanosphaer
Displaying 17 items

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