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rifcsplowo2_01_scaffold_7328

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_7328_1
unknown

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comp(2..430)
-----------------
DNA (429bp)
protein (143aa)

This feature has no annotations

rifcsplowo2_01_scaffold_7328_2
unknown

Not on your lists

583..807
-----------------
DNA (225bp)
protein (75aa)

This feature has no annotations

rifcsplowo2_01_scaffold_7328_3

Not on your lists

809..1210
-----------------
DNA (402bp)
protein (134aa)
Putative ribonuclease VapC protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=U2DNN7_9EURY
Uncharacterized protein {ECO:0000313|EMBL:AKA49140.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
putative nucleic acid-binding protein, contains PIN domain
rifcsplowo2_01_scaffold_7328_4
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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1243..2379
-----------------
DNA (1137bp)
protein (379aa)
GTP-binding protein; K06944 Tax=RBG_13_Woesearchaeota_36_6_curated
GTPase; K06944 id=5044068 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
small GTP-binding protein
rifcsplowo2_01_scaffold_7328_5
unknown

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2415..2510
-----------------
DNA (96bp)
protein (32aa)

This feature has no annotations

rifcsplowo2_01_scaffold_7328_6
Peregrinibacteria bacterium GW2011_GWF2_33_10, Peregrinibacteria, Bacteria

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2589..3101
-----------------
DNA (513bp)
protein (171aa)
shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] id=5094857 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
Shikimate kinase, shikimate kinase {ECO:0000313|EMBL:KKP38087.1}; EC=2.7.1.71 {ECO:0000313|EMBL:KKP38087.1};; TaxID=1619065 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium
aroK; shikimate kinase (EC:2.7.1.71)
rifcsplowo2_01_scaffold_7328_7
CG_Woesearch_01, Woesearchaeota, Archaea

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3110..4579
-----------------
DNA (1470bp)
protein (490aa)
phenylalanyl-tRNA synthetase subunit alpha; K01889 phenylalanyl-tRNA synthetase alpha chain [EC:6.1.1.20] Tax=CG_Woesearch_01
Phenylalanine--tRNA ligase alpha subunit id=5800822 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
phenylalanyl-tRNA synthetase subunit alpha
rifcsplowo2_01_scaffold_7328_8
unknown

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4583..4777
-----------------
DNA (195bp)
protein (65aa)

This feature has no annotations

rifcsplowo2_01_scaffold_7328_9
CG_Woesearch_01, Woesearchaeota, Archaea

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4779..6437
-----------------
DNA (1659bp)
protein (553aa)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Thermococcus litoralis DSM 5473 RepID=H3ZPR9_THELI id=5103639 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
phenylalanyl-tRNA synthetase subunit beta Tax=CG_Woesearch_01
Phenylalanine-tRNA ligase beta subunit
rifcsplowo2_01_scaffold_7328_10
unknown

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6481..6963
-----------------
DNA (483bp)
protein (161aa)

This feature has no annotations

rifcsplowo2_01_scaffold_7328_11
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(6969..7484)
-----------------
DNA (516bp)
protein (172aa)
50S ribosomal protein L14 Tax=RBG_13_Woesearchaeota_36_6_curated
50S ribosomal protein L14e id=5800175 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L14e
rifcsplowo2_01_scaffold_7328_12
Methanotorris igneus, Methanotorris, Methanococcales, Methanococci, Euryarchaeota, Archaea

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comp(7672..7977)
-----------------
DNA (306bp)
protein (102aa)
50S ribosomal protein L34e n=1 Tax=Methanotorris igneus (strain DSM 5666 / JCM 11834 / Kol 5) RepID=F6BBN9_METIK
50S ribosomal protein L34
50S ribosomal protein L34e {ECO:0000256|HAMAP-Rule:MF_00349}; TaxID=880724 species="Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanotorris.;" source="Methanotorris
rifcsplowo2_01_scaffold_7328_13
AR11, Woesearchaeaota, DPANN, Archaea

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8017..8505
-----------------
DNA (489bp)
protein (163aa)
Tax=AR11
rifcsplowo2_01_scaffold_7328_14

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comp(8510..9298)
-----------------
DNA (789bp)
protein (263aa)
Putative uncharacterized protein id=5042325 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO46823.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsplowo2_01_scaffold_7328_15
unknown

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comp(9301..9417)
-----------------
DNA (117bp)
protein (39aa)

This feature has no annotations

rifcsplowo2_01_scaffold_7328_16
AR11, Woesearchaeaota, DPANN, Archaea

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comp(9419..10834)
-----------------
DNA (1416bp)
protein (472aa)
secY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY Tax=AR11
SecY; preprotein translocase subunit SecY; K03076 preprotein translocase subunit SecY id=5041782 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Protein translocase subunit SecY
rifcsplowo2_01_scaffold_7328_17

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comp(10840..11307)
-----------------
DNA (468bp)
protein (156aa)
50S ribosomal protein L15 {ECO:0000256|HAMAP-Rule:MF_01341}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl15p; 50S ribosomal protein L15P; K02876 large subunit ribosomal protein L15 id=5042323 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L15P
rifcsplowo2_01_scaffold_7328_18
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(11307..11750)
-----------------
DNA (444bp)
protein (148aa)
50S ribosomal protein L30 Tax=CG_Woesearch_02
50S ribosomal protein L30P id=5800042 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rpl30p; 50S ribosomal protein L30
rifcsplowo2_01_scaffold_7328_19

Not on your lists


comp(11752..12642)
-----------------
DNA (891bp)
protein (297aa)
30S ribosomal protein S5P, small subunit ribosomal protein S5 {ECO:0000313|EMBL:KHO51233.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
rps5p; 30S ribosomal protein S5P; K02988 small subunit ribosomal protein S5 id=5041779 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
30S ribosomal protein S5
rifcsplowo2_01_scaffold_7328_20

Not on your lists


comp(12635..13213)
-----------------
DNA (579bp)
protein (193aa)
50S ribosomal protein L18P n=1 Tax=Nanoarchaeum equitans (strain Kin4-M) RepID=RL18_NANEQ
50S ribosomal protein L18 {ECO:0000256|HAMAP-Rule:MF_01337, ECO:0000256|SAAS:SAAS00243986}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl18p; 50S ribosomal protein L18P
rifcsplowo2_01_scaffold_7328_21

Not on your lists

comp(13210..13653)
-----------------
DNA (444bp)
protein (148aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000381F97D
50S ribosomal protein L19e {ECO:0000256|HAMAP-Rule:MF_01475}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
rpl19e; 50S ribosomal protein L19e
rifcsplowo2_01_scaffold_7328_22

Not on your lists


comp(13657..14217)
-----------------
DNA (561bp)
protein (187aa)
Large subunit ribosomal protein L32e {ECO:0000313|EMBL:KHO51172.1}; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
50S ribosomal protein L32; K02912 large subunit ribosomal protein L32e id=5042318 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rpl32e; 50S ribosomal protein L32
rifcsplowo2_01_scaffold_7328_23

Not on your lists


comp(14221..14742)
-----------------
DNA (522bp)
protein (174aa)
50S ribosomal protein L6P {ECO:0000313|EMBL:AJS12027.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L6 id=5800047 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
50S ribosomal protein L6P
rifcsplowo2_01_scaffold_7328_24

Not on your lists


comp(14787..15176)
-----------------
DNA (390bp)
protein (130aa)
30S ribosomal protein S8 {ECO:0000256|HAMAP-Rule:MF_01302}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S8P; K02994 small subunit ribosomal protein S8 id=5042316 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rps8p; ribosomal protein S8P Rps8p
rifcsplowo2_01_scaffold_7328_25
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

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comp(15185..15415)
-----------------
DNA (231bp)
protein (77aa)
hypothetical protein; K02954 small subunit ribosomal protein S14 Tax=RBG_13_Woesearchaeota_36_6_curated
hypothetical protein; K02954 small subunit ribosomal protein S14 id=5042315 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
SSU ribosomal protein S14P
rifcsplowo2_01_scaffold_7328_26

Not on your lists


comp(15417..15920)
-----------------
DNA (504bp)
protein (168aa)
50S ribosomal protein L5 {ECO:0000256|HAMAP-Rule:MF_01333}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L5; K02931 large subunit ribosomal protein L5 id=5042314 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L5
rifcsplowo2_01_scaffold_7328_27
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(15928..16617)
-----------------
DNA (690bp)
protein (230aa)
SSU ribosomal protein s4e; K02987 small subunit ribosomal protein S4e Tax=AR11
30S ribosomal protein S4E; K02987 small subunit ribosomal protein S4e id=5042313 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
30S ribosomal protein S4E
rifcsplowo2_01_scaffold_7328_28

Not on your lists


comp(16595..16996)
-----------------
DNA (402bp)
protein (134aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI000372D201
50S ribosomal protein L24P {ECO:0000256|HAMAP-Rule:MF_01326}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
50S ribosomal protein L24
rifcsplowo2_01_scaffold_7328_29

Not on your lists


comp(16998..17399)
-----------------
DNA (402bp)
protein (134aa)
50S ribosomal protein L14 {ECO:0000256|HAMAP-Rule:MF_01367}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
rpl14p; 50S ribosomal protein L14P; K02874 large subunit ribosomal protein L14 id=5042311 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
50S ribosomal protein L14P
rifcsplowo2_01_scaffold_7328_30

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comp(17401..17823)
-----------------
DNA (423bp)
protein (141aa)
30S ribosomal protein S17P n=1 Tax=Methanocaldococcus villosus KIN24-T80 RepID=N6VYH7_9EURY
30S ribosomal protein S17P {ECO:0000313|EMBL:AJS12162.1}; TaxID=115547 species="Archaea; environmental samples.;" source="uncultured archaeon.;"
30S ribosomal protein S17
Displaying items 1-30 of 44 in total

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