ggKbase home page

rifcsplowo2_01_scaffold_3620

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_3620_1
Methanobacterium lacus, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

Not on your lists

1..177
-----------------
DNA (177bp)
protein (59aa)
PHP domain protein n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0T832_METSL
PHP domain-containing protein
PHP domain protein {ECO:0000313|EMBL:ADZ09658.1}; TaxID=877455 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanobacterium.;" source="Methanobacterium l
rifcsplowo2_01_scaffold_3620_2
CG_Woesearch_01, Woesearchaeota, Archaea

Not on your lists

718..1710
-----------------
DNA (993bp)
protein (331aa)
glyceraldehyde-3-phosphate dehydrogenase, type I; K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] Tax=CG_Woesearch_01
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12); K00134 glyceraldehyde 3-phosphate dehydrogenase [EC:1.2.1.12] id=5045844 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
glyceraldehyde-3-phosphate dehydrogenase, type I (EC:1.2.1.12)
rifcsplowo2_01_scaffold_3620_3
AR15, Woesearchaeaota, DPANN, Archaea

Not on your lists

1753..2763
-----------------
DNA (1011bp)
protein (337aa)
truD; tRNA pseudouridine synthase D (EC:5.4.99.12)
Probable tRNA pseudouridine synthase D Tax=AR15
Probable tRNA pseudouridine synthase D id=5799863 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_3620_4
Thermodesulfatator indicus, Thermodesulfatator, Thermodesulfobacteriales, Thermodesulfobacteria, Thermodesulfobacteria, Bacteria

Not on your lists

comp(2750..3424)
-----------------
DNA (675bp)
protein (225aa)
Adenylate kinase {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU003331}; Short=AK {ECO:0000256|HAMAP-Rule:MF_00235};; EC=2.7.4.3 {ECO:0000256|HAMAP-Rule:MF_00235, ECO:0000256|RuleBase:RU0033
Adenylate kinase n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8AA58_THEID
adenylate kinase
rifcsplowo2_01_scaffold_3620_5

Not on your lists

comp(3426..3947)
-----------------
DNA (522bp)
protein (174aa)
hypothetical protein
id=5103004 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Uncharacterized protein {ECO:0000313|EMBL:AJF62285.1}; TaxID=1579378 species="Archaea.;" source="archaeon GW2011_AR20.;"
rifcsplowo2_01_scaffold_3620_6
unknown

Not on your lists

comp(3898..4377)
-----------------
DNA (480bp)
protein (160aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3620_7

Not on your lists

comp(4775..5380)
-----------------
DNA (606bp)
protein (202aa)
Marine sediment metagenome DNA, contig: S01H1_S18736 {ECO:0000313|EMBL:GAG26490.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
seg id=5041693 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
rifcsplowo2_01_scaffold_3620_8
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

5523..6647
-----------------
DNA (1125bp)
protein (375aa)
ychF; translation-associated GTPase; K06942 Tax=CG_Woesearch_02
Translation-associated GTPase id=5800320 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
hypothetical protein
rifcsplowo2_01_scaffold_3620_9
GWA2_WOR_2_47_8_curated, WOR-2, Bacteria

Not on your lists

comp(6835..7320)
-----------------
DNA (486bp)
protein (162aa)
Tax=GWA2_WOR_2_47_8_curated
rifcsplowo2_01_scaffold_3620_10
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(7324..7722)
-----------------
DNA (399bp)
protein (133aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
Putative uncharacterized protein id=2019086 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
hypothetical protein
rifcsplowo2_01_scaffold_3620_11
R_Bacteroidetes_44_7, Bacteroidetes, Bacteria

Not on your lists

comp(7744..8652)
-----------------
DNA (909bp)
protein (303aa)
Tax=RIFCSPHIGHO2_02_FULL_Bacteroidetes_44_7_curated
rifcsplowo2_01_scaffold_3620_12
R_OP11_Levybacteria_36_8, Levybacteria, Microgenomates, Bacteria

Not on your lists

8749..9447
-----------------
DNA (699bp)
protein (233aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00037A53A1
glycosyl transferase family 2 Tax=RIFCSPLOWO2_02_FULL_OP11_Levybacteria_36_8_curated
family 2 glycosyl transferase
rifcsplowo2_01_scaffold_3620_13
Anaerococcus hydrogenalis, Anaerococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9451..10044
-----------------
DNA (594bp)
protein (198aa)
Acyltransferase n=1 Tax=Anaerococcus hydrogenalis ACS-025-V-Sch4 RepID=F0GZQ6_9FIRM
Acyltransferase {ECO:0000313|EMBL:EEB36327.1}; TaxID=561177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Anaerococcus.;" source="Anaerococcus hydrogenalis DSM 7454.;"
1-acyl-sn-glycerol-3-phosphate acyltransferase
rifcsplowo2_01_scaffold_3620_14

Not on your lists

comp(10046..15268)
-----------------
DNA (5223bp)
protein (1741aa)
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
Chromosome partition protein Smc id=5800619 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
chromosome segregation protein SMC
rifcsplowo2_01_scaffold_3620_15

Not on your lists

comp(15313..15561)
-----------------
DNA (249bp)
protein (83aa)
hypothetical protein id=5048510 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
Uncharacterized protein {ECO:0000313|EMBL:KHO45544.1}; TaxID=1579365 species="Archaea.;" source="archaeon GW2011_AR3.;"
hypothetical protein
rifcsplowo2_01_scaffold_3620_16
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(15555..15824)
-----------------
DNA (270bp)
protein (90aa)
AbrB family transcriptional regulator Tax=RBG_13_Pacearchaeota_36_9_curated
AbrB family transcriptional regulator id=5041622 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
AbrB family transcriptional regulator
rifcsplowo2_01_scaffold_3620_17
unknown

Not on your lists

comp(15894..16094)
-----------------
DNA (201bp)
protein (67aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3620_18
unknown

Not on your lists

16229..16747
-----------------
DNA (519bp)
protein (173aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3620_19
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(17139..18206)
-----------------
DNA (1068bp)
protein (356aa)
hypothetical protein
Phosphoesterase, DHHA1 Tax=CG_Woesearch_02
DHH phosphoesterases id=5800602 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_3620_20
R_WWE3_53_14, WWE3, Bacteria

Not on your lists

comp(18315..18593)
-----------------
DNA (279bp)
protein (93aa)
hypothetical protein
ATP-cone Tax=RIFCSPLOWO2_01_FULL_WWE3_53_14_curated
ATP-cone id=5240959 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
rifcsplowo2_01_scaffold_3620_21

Not on your lists

comp(18600..19307)
-----------------
DNA (708bp)
protein (236aa)
Cytochrome c biogenesis protein, transmembrane region {ECO:0000313|EMBL:KHO51024.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
cytochrome c biogenesis transmembrane protein id=5044143 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
cytochrome c biogenesis transmembrane protein
rifcsplowo2_01_scaffold_3620_22
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(19323..19745)
-----------------
DNA (423bp)
protein (141aa)
hypothetical protein n=1 Tax=Paenibacillus elgii RepID=UPI000248C748
hypothetical protein
Tax=AR11
rifcsplowo2_01_scaffold_3620_23
R_OD1_Magasanikbacteria_50_9b, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(19754..20044)
-----------------
DNA (291bp)
protein (97aa)
Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_50_9b_curated
rifcsplowo2_01_scaffold_3620_24
R_OD1_Magasanikbacteria_50_9b, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

comp(20044..20454)
-----------------
DNA (411bp)
protein (137aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DAD1_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_50_9b_curated
hypothetical protein
rifcsplowo2_01_scaffold_3620_25
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20516..20866
-----------------
DNA (351bp)
protein (117aa)
HxlR family transcriptional regulator n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0C471_9EURY
HxlR family transcriptional regulator {ECO:0000313|EMBL:ELZ17117.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena li
MarR family transcriptional regulator
rifcsplowo2_01_scaffold_3620_26
unknown

Not on your lists

20952..21071
-----------------
DNA (120bp)
protein (40aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3620_27
unknown

Not on your lists

comp(21149..21958)
-----------------
DNA (810bp)
protein (270aa)

This feature has no annotations

rifcsplowo2_01_scaffold_3620_28
Candidatus Nitrososphaera gargensis, Nitrososphaera, Nitrososphaerales, Nitrososphaeria, Thaumarchaeota, Archaea

Not on your lists

comp(22003..23364)
-----------------
DNA (1362bp)
protein (454aa)
Putative dihydrolipoamide dehydrogenase n=1 Tax=Nitrososphaera gargensis (strain Ga9.2) RepID=K0ILP2_NITGG
dihydrolipoamide dehydrogenase
Putative dihydrolipoamide dehydrogenase {ECO:0000313|EMBL:AFU59587.1}; TaxID=1237085 species="Archaea; Thaumarchaeota; Nitrososphaeria; Nitrososphaerales; Nitrososphaeraceae; Nitrososphaera.;" source=
rifcsplowo2_01_scaffold_3620_29
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(23408..24193)
-----------------
DNA (786bp)
protein (262aa)
putative ABC transporter ATP-binding and permease; K01992 ABC-2 type transport system permease protein id=5041686 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
putative ABC transporter ATP-binding and permease; K01992 ABC-2 type transport system permease protein Tax=AR4
putative ABC transporter ATP-binding and permease
rifcsplowo2_01_scaffold_3620_30
AR4, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(24206..25159)
-----------------
DNA (954bp)
protein (318aa)
daunorubicin resistance ABC transporter ATPase subunit; K09687 antibiotic transport system ATP-binding protein id=5041685 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
daunorubicin resistance ABC transporter ATPase subunit; K09687 antibiotic transport system ATP-binding protein Tax=AR4
daunorubicin resistance ATP-binding protein
Displaying items 1-30 of 36 in total

View Taxonomy