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rifcsplowo2_01_scaffold_23291

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_23291_1
unknown

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comp(3..131)
-----------------
DNA (129bp)
protein (43aa)

This feature has no annotations

rifcsplowo2_01_scaffold_23291_2
R_SM2F11_46_11, SM2F11, Bacteria

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comp(176..778)
-----------------
DNA (603bp)
protein (201aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_SM2F11_46_11_curated
Putative uncharacterized protein id=4731754 bin=GWC2_OD1_43_27 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
YHS domain-containing protein
rifcsplowo2_01_scaffold_23291_3
R_OD1_Nomurabacteria_42_16, Nomurabacteria, Parcubacteria, Bacteria

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comp(796..1233)
-----------------
DNA (438bp)
protein (146aa)
Raf kinase inhibitor-like protein, YbhB/YbcL family n=1 Tax=Pleurocapsa sp. PCC 7327 RepID=K9T8D3_9CYAN
Raf kinase inhibitor-like protein, YbhB/YbcL family Tax=RIFCSPHIGHO2_01_FULL_OD1_Nomurabacteria_42_16_curated
Raf kinase inhibitor-like protein, YbhB/YbcL family
rifcsplowo2_01_scaffold_23291_4

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comp(1267..1959)
-----------------
DNA (693bp)
protein (231aa)
Orotidine 5'-phosphate decarboxylase; K01591 orotidine-5'-phosphate decarboxylase [EC:4.1.1.23] id=5046258 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
orotidine-5'-phosphate decarboxylase (EC:4.1.1.23)
Orotidine 5'-phosphate decarboxylase {ECO:0000313|EMBL:KHO53019.1}; TaxID=1579371 species="Archaea.;" source="archaeon GW2011_AR11.;"
rifcsplowo2_01_scaffold_23291_5
AR5, Aenigmarchaeota, DPANN, Archaea

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comp(1961..2359)
-----------------
DNA (399bp)
protein (133aa)
id=5044417 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
alias=gwa2_scaffold_521_156 Tax=AR5
PilT protein domain protein
rifcsplowo2_01_scaffold_23291_6
unknown

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comp(2356..2598)
-----------------
DNA (243bp)
protein (81aa)

This feature has no annotations

rifcsplowo2_01_scaffold_23291_7
Enterococcus columbae, Enterococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

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comp(2683..3306)
-----------------
DNA (624bp)
protein (208aa)
Orotate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01208, ECO:0000256|SAAS:SAAS00216328}; Short=OPRT {ECO:0000256|HAMAP-Rule:MF_01208};; Short=OPRTase {ECO:0000256|HAMAP-Rule:MF_01208};; EC=
pyrE; orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Enterococcus columbae DSM 7374 = ATCC 51263 RepID=S0KIH3_9ENTE
rifcsplowo2_01_scaffold_23291_8
unknown

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comp(3523..4347)
-----------------
DNA (825bp)
protein (275aa)

This feature has no annotations

rifcsplowo2_01_scaffold_23291_9

Not on your lists

comp(4537..5739)
-----------------
DNA (1203bp)
protein (401aa)
dihydroorotase (EC:3.5.2.5); K01465 dihydroorotase [EC:3.5.2.3] id=5041872 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Marine sediment metagenome DNA, contig: S01H1_L03890 {ECO:0000313|EMBL:GAF77568.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
dihydroorotase
rifcsplowo2_01_scaffold_23291_10
unknown

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comp(5741..5923)
-----------------
DNA (183bp)
protein (61aa)

This feature has no annotations

rifcsplowo2_01_scaffold_23291_11
unknown

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5975..6115
-----------------
DNA (141bp)
protein (47aa)

This feature has no annotations

rifcsplowo2_01_scaffold_23291_12
unknown

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6210..6305
-----------------
DNA (96bp)
protein (32aa)

This feature has no annotations

rifcsplowo2_01_scaffold_23291_13
unknown

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comp(6309..6764)
-----------------
DNA (456bp)
protein (152aa)

This feature has no annotations

rifcsplowo2_01_scaffold_23291_14
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

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6879..7547
-----------------
DNA (669bp)
protein (223aa)
hypothetical protein n=1 Tax=Nanoarchaeota archaeon SCGC AAA011-L22 RepID=UPI00036D2195
transcriptional regulator TrmB
transcriptional regulator TrmB Tax=RBG_13_Pacearchaeota_36_9_curated
rifcsplowo2_01_scaffold_23291_15
R_OD1_Kaiserbacteria_53_17, Kaiserbacteria, Parcubacteria, Bacteria

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comp(7631..8131)
-----------------
DNA (501bp)
protein (167aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY251 RepID=UPI0003788F74
Protein-S-isoprenylcysteineO-methyltransferase Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_53_17_curated
isoprenylcysteine carboxyl methyltransferase
rifcsplowo2_01_scaffold_23291_16
Candidatus Scalindua brodae, Candidatus Scalindua, Candidatus Brocadiales, Planctomycetia, Planctomycetes, Bacteria

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comp(8135..8944)
-----------------
DNA (810bp)
protein (270aa)
Dihydroorotate oxidase (Dihydroorotate dehydrogenase B) electron-transfer subunit {ECO:0000313|EMBL:KHE92222.1}; EC=1.3.98.1 {ECO:0000313|EMBL:KHE92222.1};; TaxID=237368 species="Bacteria; Planctomyce
pyrK; dihydroorotate dehydrogenase electron transfer subunit PyrK (EC:1.3.98.1)
Dihydroorotate oxidase electron-transfer subunit n=1 Tax=planctomycete KSU-1 RepID=I3IRA0_9PLAN
rifcsplowo2_01_scaffold_23291_17

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comp(8941..9555)
-----------------
DNA (615bp)
protein (205aa)
Ubiquinone/menaquinone biosynthesis methyltransferase UbiE n=1 Tax=Haloarcula californiae ATCC 33799 RepID=M0KKN8_9EURY
Marine sediment metagenome DNA, contig: S01H4_L01226 {ECO:0000313|EMBL:GAG72161.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
type 11 methyltransferase
rifcsplowo2_01_scaffold_23291_18
RBG_13_Pacearchaeota_36_9_curated, Pacearchaeota, DPANN, Archaea

Not on your lists

comp(9536..10522)
-----------------
DNA (987bp)
protein (329aa)
UPI0003D1BE78 related cluster n=1 Tax=unknown RepID=UPI0003D1BE78
hypothetical protein Tax=RBG_13_Pacearchaeota_36_9_curated
hypothetical protein
rifcsplowo2_01_scaffold_23291_19
AR10, Diapherotrites, DPANN, Archaea

Not on your lists

comp(10524..11426)
-----------------
DNA (903bp)
protein (301aa)
dihydroorotate dehydrogenase fumarate (EC:1.3.98.1)
dihydroorotate dehydrogenase 1B (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] id=5241014 bin=GW2011_AR10_complete species=GW2011_AR10 genus=GW2011_AR10 taxon_order=GW2011_AR10 taxon_class=GW2011_AR10 phylum=Archaeon tax=GW2011_AR10_complete organism_group=Archaeon organism_desc=closed, complete GWA2_AR10
dihydroorotate dehydrogenase 1B (EC:1.3.98.1); K00226 dihydroorotate dehydrogenase (fumarate) [EC:1.3.98.1] Tax=AR10
rifcsplowo2_01_scaffold_23291_20
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(11543..12076)
-----------------
DNA (534bp)
protein (178aa)
pyrI; aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase regulatory chain n=1 Tax=Pyrococcus abyssi (strain GE5 / Orsay) RepID=PYRI_PYRAB
Aspartate carbamoyltransferase regulatory chain Tax=AR11
rifcsplowo2_01_scaffold_23291_21
AR11, Woesearchaeaota, DPANN, Archaea

Not on your lists

comp(12079..12996)
-----------------
DNA (918bp)
protein (306aa)
Aspartate carbamoyltransferase n=1 Tax=Pyrococcus sp. ST04 RepID=I3RDN4_9EURY
Aspartate carbamoyltransferase Tax=AR11
aspartate carbamoyltransferase catalytic subunit
rifcsplowo2_01_scaffold_23291_22
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(13139..13690)
-----------------
DNA (552bp)
protein (184aa)
Putative signal transduction protein with CBS domains n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GXK7_METFV
putative signal transduction protein with CBS domains Tax=CG_Woesearch_02
signal transduction protein with cbs domains
rifcsplowo2_01_scaffold_23291_23
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists

comp(14020..15948)
-----------------
DNA (1929bp)
protein (643aa)
hypothetical protein Tax=CG_Woesearch_02
hypothetical protein id=5047130 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
Minimal nucleotidyltransferase fused to HEPN protein
rifcsplowo2_01_scaffold_23291_24

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16091..16312
-----------------
DNA (222bp)
protein (74aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KHO50117.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
id=5103338 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
rifcsplowo2_01_scaffold_23291_25

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16281..16667
-----------------
DNA (387bp)
protein (129aa)
Probable ribonuclease VapC n=1 Tax=Thermococcus sp. AM4 RepID=B7R4X0_9EURY id=5103339 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
PIN protein {ECO:0000313|EMBL:KHO50118.1}; TaxID=1579369 species="Archaea.;" source="archaeon GW2011_AR9.;"
putative ribonuclease VapC
rifcsplowo2_01_scaffold_23291_26
unknown

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16818..17033
-----------------
DNA (216bp)
protein (72aa)

This feature has no annotations

Displaying 26 items

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