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rifcsplowo2_01_scaffold_26621

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_26621_1
CG_Omnitr_04, Omnitrophica, Bacteria

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comp(1..501)
-----------------
DNA (501bp)
protein (167aa)
hypothetical protein
Putative uncharacterized protein Tax=CG_Omnitr_04
Putative uncharacterized protein id=5050194 bin=GW2011_AR3 species=GW2011_AR3 genus=GW2011_AR3 taxon_order=GW2011_AR3 taxon_class=GW2011_AR3 phylum=Archaeon tax=GW2011_AR3 organism_group=Woesearchaeota organism_desc=gwa2_.43_13b
rifcsplowo2_01_scaffold_26621_2
AR11, Woesearchaeaota, DPANN, Archaea

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649..2436
-----------------
DNA (1788bp)
protein (596aa)
Putative sodium/proton antiporter n=1 Tax=Pandoraea sp. SD6-2 RepID=R7X2A9_9BURK
transporter, CPA2 family; K03455 monovalent cation:H+ antiporter-2, CPA2 family Tax=AR11
membrane protein of unknown function
rifcsplowo2_01_scaffold_26621_3
CG_Micra_04, Micraarchaeota, Archaea

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2429..2857
-----------------
DNA (429bp)
protein (143aa)
potassium channel protein Tax=CG_Micra_04
Potassium channel protein
potassium channel protein id=5040537 bin=GW2011_AR5 species=GW2011_AR5 genus=GW2011_AR5 taxon_order=GW2011_AR5 taxon_class=GW2011_AR5 phylum=Archaeon tax=GW2011_AR5 organism_group=Archaea organism_desc=gwa2_.48_18 Replace with curated version!
rifcsplowo2_01_scaffold_26621_4

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comp(2859..5705)
-----------------
DNA (2847bp)
protein (949aa)
Leucyl-tRNA synthetase {ECO:0000313|EMBL:KHO50409.1}; EC=6.1.1.4 {ECO:0000313|EMBL:KHO50409.1};; TaxID=1579374 species="Archaea.;" source="archaeon GW2011_AR16.;"
leuS; leucyl-tRNA synthetase (EC:6.1.1.4)
Leucine--tRNA ligase id=5799918 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rifcsplowo2_01_scaffold_26621_5
Thermoplasmatales archaeon SCGC AB-539-C06, Thermoplasmatales, Thermoplasmata, Euryarchaeota, Archaea

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5748..6620
-----------------
DNA (873bp)
protein (291aa)
Putative membrane protein n=1 Tax=Thermoplasmatales archaeon SCGC AB-539-C06 RepID=N6WJR2_9EURY
Putative membrane protein {ECO:0000313|EMBL:ENO11786.1}; TaxID=1242690 species="Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales.;" source="Thermoplasmatales archaeon SCGC AB-539-C06.;"
integral membrane protein
rifcsplowo2_01_scaffold_26621_6

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comp(6621..7199)
-----------------
DNA (579bp)
protein (193aa)
hypothetical protein id=5049606 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
Uncharacterized protein {ECO:0000313|EMBL:KHO53644.1}; TaxID=1579376 species="Archaea.;" source="archaeon GW2011_AR18.;"
hypothetical protein
rifcsplowo2_01_scaffold_26621_7

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comp(7227..7400)
-----------------
DNA (174bp)
protein (58aa)
DNA-directed RNA polymerase subunit N n=1 Tax=uncultured organism HF70_19B12 RepID=Q2Q0G7_9ZZZZ id=5103677 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Marine sediment metagenome DNA, contig: S01H1_S00836 {ECO:0000313|EMBL:GAF92383.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
DNA-directed RNA polymerase subunit N
rifcsplowo2_01_scaffold_26621_8
unknown

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comp(7397..7528)
-----------------
DNA (132bp)
protein (44aa)

This feature has no annotations

rifcsplowo2_01_scaffold_26621_9
unknown

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comp(7531..8811)
-----------------
DNA (1281bp)
protein (427aa)

This feature has no annotations

rifcsplowo2_01_scaffold_26621_10
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(9102..9515)
-----------------
DNA (414bp)
protein (138aa)
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=CG_Woesearch_02
SSU ribosomal protein S9P id=5799887 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
SSU ribosomal protein S16e (S9p)
rifcsplowo2_01_scaffold_26621_11

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comp(9500..9919)
-----------------
DNA (420bp)
protein (140aa)
50S ribosomal protein L13P n=10 Tax=Thermococcus RepID=RL13_PYRKO id=5103680 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
Marine sediment metagenome DNA, contig: S01H1_S00916 {ECO:0000313|EMBL:GAF93287.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
50S ribosomal protein L13P
rifcsplowo2_01_scaffold_26621_12
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(9931..10296)
-----------------
DNA (366bp)
protein (122aa)
50S ribosomal protein L18e n=2 Tax=Staphylothermus RepID=A3DMQ7_STAMF id=5103681 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
50S ribosomal protein L15; K02883 large subunit ribosomal protein L18e Tax=CG_Woesearch_02
50S ribosomal protein L18e
rifcsplowo2_01_scaffold_26621_13
unknown

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comp(10331..10693)
-----------------
DNA (363bp)
protein (121aa)

This feature has no annotations

rifcsplowo2_01_scaffold_26621_14
RBG_13_Woesearchaeota_36_6_curated, Woesearchaeota, DPANN, Archaea

Not on your lists

comp(10850..11647)
-----------------
DNA (798bp)
protein (266aa)
RNA polymerase insert; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] Tax=RBG_13_Woesearchaeota_36_6_curated
RNA polymerase insert; K03047 DNA-directed RNA polymerase subunit D [EC:2.7.7.6] id=5049647 bin=GW2011_AR18 species=GW2011_AR18 genus=GW2011_AR18 taxon_order=GW2011_AR18 taxon_class=GW2011_AR18 phylum=Archaeon tax=GW2011_AR18 organism_group=Woesearchaeota organism_desc=gwa2_.30_20c
DNA-directed RNA polymerase subunit D
rifcsplowo2_01_scaffold_26621_15
unknown

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comp(11687..12052)
-----------------
DNA (366bp)
protein (122aa)

This feature has no annotations

rifcsplowo2_01_scaffold_26621_16
CG_Woesearch_03, Woesearchaeota, Archaea

Not on your lists


comp(12216..12611)
-----------------
DNA (396bp)
protein (132aa)
rps11p; 30S ribosomal protein S11P; K02948 small subunit ribosomal protein S11 Tax=CG_Woesearch_03
30S ribosomal protein S11 id=5799891 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
rps11p; 30S ribosomal protein S11P
rifcsplowo2_01_scaffold_26621_17

Not on your lists


comp(12613..13140)
-----------------
DNA (528bp)
protein (176aa)
30S ribosomal protein S4 n=1 Tax=Thermococcus barophilus (strain DSM 11836 / MP) RepID=F0LHM2_THEBM
Marine sediment metagenome DNA, contig: S01H1_L06460 {ECO:0000313|EMBL:GAF76524.1}; Flags: Fragment;; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marin
30S ribosomal protein S4
rifcsplowo2_01_scaffold_26621_18
CG_Woesearch_02, Woesearchaeota, Archaea

Not on your lists


comp(13248..13730)
-----------------
DNA (483bp)
protein (161aa)
rps13p; 30S ribosomal protein S13p; K02952 small subunit ribosomal protein S13 Tax=CG_Woesearch_02
30S ribosomal protein S13P id=5799893 bin=GW2011_AR15 species=GW2011_AR15 genus=GW2011_AR15 taxon_order=GW2011_AR15 taxon_class=GW2011_AR15 phylum=Archaeon tax=GW2011_AR15 organism_group=Woesearchaeota organism_desc=One curated contig, not circularized
30S ribosomal protein S13
rifcsplowo2_01_scaffold_26621_19
unknown

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14012..14377
-----------------
DNA (366bp)
protein (122aa)

This feature has no annotations

rifcsplowo2_01_scaffold_26621_20
R_OP11_Levybacteria_36_13, Levybacteria, Microgenomates, Bacteria

Not on your lists

14379..14774
-----------------
DNA (396bp)
protein (132aa)
methionine sulfoxide reductase B (EC:1.8.4.11); K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] Tax=RIFCSPLOWO2_01_FULL_OP11_Levybacteria_36_13_curated
methionine-R-sulfoxide reductase (EC:1.8.4.12)
Peptide methionine sulfoxide reductase MsrB n=1 Tax=Methanohalobium evestigatum (strain DSM 3721 / OCM 161 / Z-7303) RepID=D7E729_METEZ
Displaying 20 items

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