ggKbase home page

rifcsplowo2_01_scaffold_42778

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
rifcsplowo2_01_scaffold_42778_1
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(2..418)
-----------------
DNA (417bp)
protein (139aa)
Histidinol dehydrogenase (EC:1.1.1.23); K00013 histidinol dehydrogenase [EC:1.1.1.23] Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
Histidinol dehydrogenase (EC:1.1.1.23)
histidinol dehydrogenase n=1 Tax=Methanothermococcus thermolithotrophicus RepID=UPI00036A4165
rifcsplowo2_01_scaffold_42778_2
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

479..829
-----------------
DNA (351bp)
protein (117aa)
chain A, red copper protein nitrosocyanin Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
red copper protein nitrosocyanin subunit A id=14431395 bin=bin3_NC10 species=Nitrosomonas europaea genus=Nitrosomonas taxon_order=Nitrosomonadales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin3_NC10 organism_group=NC10
chain A, red copper protein nitrosocyanin
rifcsplowo2_01_scaffold_42778_3
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(833..2500)
-----------------
DNA (1668bp)
protein (556aa)
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
rifcsplowo2_01_scaffold_42778_4
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(2530..3735)
-----------------
DNA (1206bp)
protein (402aa)
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
rifcsplowo2_01_scaffold_42778_5
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(3840..4979)
-----------------
DNA (1140bp)
protein (380aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase ; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Uncultured termite group 1 bacterium phylotype Rs-D17 RepID=MURA_UNCTG
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
rifcsplowo2_01_scaffold_42778_6
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(5035..5823)
-----------------
DNA (789bp)
protein (263aa)
hypothetical protein n=1 Tax=[Clostridium] glycolicum RepID=UPI000370EE8D
protein-(glutamine-N5) methyltransferase, release factor-specific Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
protein-(glutamine-N5) methyltransferase, release factor-specific
rifcsplowo2_01_scaffold_42778_7
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(5813..6898)
-----------------
DNA (1086bp)
protein (362aa)
Peptide chain release factor 1 n=1 Tax=Thermanaerovibrio acidaminovorans (strain ATCC 49978 / DSM 6589 / Su883) RepID=D1B9V1_THEAS
peptide chain release factor 1; K02835 peptide chain release factor 1 Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
peptide chain release factor 1
rifcsplowo2_01_scaffold_42778_8
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists


comp(6961..7296)
-----------------
DNA (336bp)
protein (112aa)
50S ribosomal protein L31 n=1 Tax=Uncultured termite group 1 bacterium phylotype Rs-D17 RepID=B1GZI4_UNCTG
50S ribosomal protein L31 ; K02909 large subunit ribosomal protein L31 Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
50S ribosomal protein L31
rifcsplowo2_01_scaffold_42778_9
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(7317..8237)
-----------------
DNA (921bp)
protein (307aa)
peptidase M23 Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
Peptidase M23 id=4982276 bin=GWA2_Elusimicrobia_66_18 species=Thermovirga lienii genus=Thermovirga taxon_order=Synergistales taxon_class=Synergistia phylum=Synergistetes tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
peptidase M23
rifcsplowo2_01_scaffold_42778_10
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(8282..9565)
-----------------
DNA (1284bp)
protein (428aa)
transcription termination factor ; K03628 transcription termination factor Rho Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
Transcription termination factor Rho id=4968611 bin=GWA2_Elusimicrobia_69_24 species=Elusimicrobium minutum genus=Elusimicrobium taxon_order=Elusimicrobiales taxon_class=Elusimicrobia phylum=Elusimicrobia tax=GWA2_Elusimicrobia_69_24 organism_group=Elusimicrobia
transcription termination factor
rifcsplowo2_01_scaffold_42778_11
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(9710..10111)
-----------------
DNA (402bp)
protein (134aa)
PAS sensor protein n=1 Tax=Holophaga foetida DSM 6591 RepID=H1NWB2_9BACT
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
hypothetical protein
rifcsplowo2_01_scaffold_42778_12
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(10179..10784)
-----------------
DNA (606bp)
protein (202aa)
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Bacillus sonorensis L12 RepID=M5P5I3_9BACI
rifcsplowo2_01_scaffold_42778_13
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(10772..11350)
-----------------
DNA (579bp)
protein (193aa)
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23); K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
formamidopyrimidine-DNA glycosylase (EC:3.2.2.23)
Formamidopyrimidine-DNA glycosylase n=1 Tax=Acidaminococcus fermentans (strain ATCC 25085 / DSM 20731 / VR4) RepID=D2RIE5_ACIFV
rifcsplowo2_01_scaffold_42778_14
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(11319..11549)
-----------------
DNA (231bp)
protein (77aa)
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
rifcsplowo2_01_scaffold_42778_15
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(11952..12170)
-----------------
DNA (219bp)
protein (73aa)
ribbon-helix-helix protein Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
Ribbon-helix-helix protein id=24530419 bin=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=RBG_19FT_COMBO_Aminicenantes_rel_58_17_partial organism_group=OP8 (Aminicenantes) organism_desc=Curation Candidate
ribbon-helix-helix protein
rifcsplowo2_01_scaffold_42778_16
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(12682..13467)
-----------------
DNA (786bp)
protein (262aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
Rhomboid family protein id=4982279 bin=GWA2_Elusimicrobia_66_18 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=GWA2_Elusimicrobia_66_18 organism_group=Elusimicrobia organism_desc=Part of new group in this phylum
hypothetical protein
rifcsplowo2_01_scaffold_42778_17
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(13458..16169)
-----------------
DNA (2712bp)
protein (904aa)
DNA polymerase I; K02335 DNA polymerase I [EC:2.7.7.7] Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
DNA polymerase I n=1 Tax=Thermodesulfatator indicus (strain DSM 15286 / JCM 11887 / CIR29812) RepID=F8ABH8_THEID
DNA polymerase I
rifcsplowo2_01_scaffold_42778_18
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(16173..16691)
-----------------
DNA (519bp)
protein (173aa)
Alkyl hydroperoxide reductase n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UU88_9AQUI
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen
rifcsplowo2_01_scaffold_42778_19
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(16783..16911)
-----------------
DNA (129bp)
protein (43aa)
Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
rifcsplowo2_01_scaffold_42778_20
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(16901..17968)
-----------------
DNA (1068bp)
protein (356aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
hypothetical protein id=14428767 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
hypothetical protein
rifcsplowo2_01_scaffold_42778_21
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(18144..18485)
-----------------
DNA (342bp)
protein (114aa)
nitrogen regulatory protein P-II; K04751 nitrogen regulatory protein P-II 1 Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
Nitrogen regulatory protein P-II family id=4619870 bin=GWF2_OP3_38_59 species=Turneriella parva genus=Turneriella taxon_order=Spirochaetales taxon_class=Spirochaetia phylum=Spirochaetes tax=GWF2_OP3_38_59 organism_group=OP3 (Omnitrophica) organism_desc=a159
nitrogen regulatory protein P-II
rifcsplowo2_01_scaffold_42778_22
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(18500..19915)
-----------------
DNA (1416bp)
protein (472aa)
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
Uncharacterized protein id=3744999 bin=GWF2_Lentisphaerae_57_35 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Lentisphaerae_57_35 organism_group=Lentisphaerae organism_desc=a459
hypothetical protein
rifcsplowo2_01_scaffold_42778_23
R_Elusimicrobia_54_10, Elusimicrobia, Bacteria

Not on your lists

comp(20281..22260)
-----------------
DNA (1980bp)
protein (660aa)
Amino acid transporter n=1 Tax=Desulfovibrio sp. U5L RepID=I2PXI4_9DELT
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_54_10_curated
Amino acid permease
rifcsplowo2_01_scaffold_42778_24
R_Elusimicrobia_60_11, Elusimicrobia, Bacteria

Not on your lists

comp(22372..23931)
-----------------
DNA (1560bp)
protein (520aa)
glutamine synthetase catalytic region; K01915 glutamine synthetase [EC:6.3.1.2] Tax=RIFCSPLOWO2_01_FULL_Elusimicrobia_60_11_curated
Glutamine synthetase catalytic region id=4908229 bin=GWA2_OP3_52_12 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
glutamine synthetase catalytic region
Displaying 24 items

View Taxonomy