ggKbase home page

RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_1
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(3..179)
-----------------
DNA (177bp)
protein (59aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_2
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(176..463)
-----------------
DNA (288bp)
protein (96aa)
DNA polymerase subunit beta; K07075 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein; K07075 id=5047486 bin=GW2011_AR4 species=GW2011_AR4 genus=GW2011_AR4 taxon_order=GW2011_AR4 taxon_class=GW2011_AR4 phylum=Archaeon tax=GW2011_AR4 organism_group=Woesearchaeota organism_desc=gwa2_.45_18
DNA polymerase subunit beta
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_3
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(521..970)
-----------------
DNA (450bp)
protein (150aa)
30S ribosomal protein S9 n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQX8_9DELT
rpsI; 30S ribosomal protein S9; K02996 small subunit ribosomal protein S9 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rpsI; 30S ribosomal protein S9
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_4
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(976..1395)
-----------------
DNA (420bp)
protein (140aa)
50S ribosomal protein L13 n=1 Tax=Tepidanaerobacter acetatoxydans (strain DSM 21804 / JCM 16047 / Re1) RepID=F4LSW9_TEPAE
rplM; ribosomal protein L13 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rplM; ribosomal protein L13
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_5
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(1397..1741)
-----------------
DNA (345bp)
protein (115aa)
LSU ribosomal protein l17p; K02879 large subunit ribosomal protein L17 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
50S ribosomal protein L17 id=3158431 bin=GWC1_CPR2_39_9 species=Nitrospina gracilis genus=Nitrospina taxon_order=Nitrospinales taxon_class=Nitrospinia phylum=Nitrospinae tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
50S ribosomal protein L17
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_6
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(1741..2682)
-----------------
DNA (942bp)
protein (314aa)
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6); K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
DNA-directed RNA polymerase, alpha subunit; K03040 DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6] id=96114 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
DNA-directed RNA polymerase subunit alpha (EC:2.7.7.6)
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_7
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(2716..3321)
-----------------
DNA (606bp)
protein (202aa)
ribosomal protein S4P Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein id=5801918 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
rpsD; 30S ribosomal protein S4
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_8
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(3324..3752)
-----------------
DNA (429bp)
protein (143aa)
30S ribosomal protein S11 n=1 Tax=uncultured bacterium RepID=K2BYK0_9BACT
30S ribosomal protein S11; K02948 small subunit ribosomal protein S11 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
30S ribosomal protein S11
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_9
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(3755..4150)
-----------------
DNA (396bp)
protein (132aa)
rpsM; 30S ribosomal protein S13; K02952 small subunit ribosomal protein S13 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
30S ribosomal protein S13 id=3013113 bin=GWC1_OD1_38_17 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
rpsM; 30S ribosomal protein S13
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_10
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(4712..5986)
-----------------
DNA (1275bp)
protein (425aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Putative uncharacterized protein id=2628739 bin=GWC1_CPR2_39_9 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_11
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(5994..6821)
-----------------
DNA (828bp)
protein (276aa)
glucose-6-phosphate isomerase (EC:5.3.1.9); K06859 glucose-6-phosphate isomerase, archaeal [EC:5.3.1.9] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
glucose-6-phosphate isomerase, archaeal (EC:5.3.1.9)
Glucose-6-phosphate isomerase n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGH8_9FIRM
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_12
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(6847..8559)
-----------------
DNA (1713bp)
protein (571aa)
alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037B0FAE
alanyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_13
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(8606..8953)
-----------------
DNA (348bp)
protein (116aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_14
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(9045..10295)
-----------------
DNA (1251bp)
protein (417aa)
prc; carboxyl-terminal protease; K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Carboxyl-terminal protease n=1 Tax=uncultured bacterium RepID=K2DZ96_9BACT
peptidase S41
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_15
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(10282..11130)
-----------------
DNA (849bp)
protein (283aa)
Uncharacterized protein n=1 Tax=Paenibacillus barengoltzii G22 RepID=R9L6K3_9BACL
family 2 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
family 2 glycosyl transferase
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_16
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(11220..12371)
-----------------
DNA (1152bp)
protein (384aa)
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1); K01933 phosphoribosylformylglycinamidine cyclo-ligase [EC:6.3.3.1] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
phosphoribosylformylglycinamidine cyclo-ligase (EC:6.3.3.1)
Phosphoribosylformylglycinamidine cyclo-ligase id=8267357 bin=CD_OP8_4m species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=CD_OP8_4m organism_group=OP8 (Aminicenantes)
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_17
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(12453..13508)
-----------------
DNA (1056bp)
protein (352aa)
family 2 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
glycosyl transferase family protein id=5096865 bin=PER_GWF2_39_17 species=PER_GWF2_39_17 genus=PER_GWF2_39_17 taxon_order=PER_GWF2_39_17 taxon_class=PER_GWF2_39_17 phylum=PER tax=PER_GWF2_39_17 organism_group=PER (Peregrinibacteria)
glycosyl transferase
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_18
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(13489..14976)
-----------------
DNA (1488bp)
protein (496aa)
transmembrane_regions 141..158 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
transmembrane_regions 141..158 id=56216 bin=ACD43 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=ACD43 organism_group=OD1 (Parcubacteria) organism_desc=OD1
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_19
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(14973..15833)
-----------------
DNA (861bp)
protein (287aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1Z2K1_9BACT
glycosyl transferase family protein; K07011 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
glycosyl transferase family protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_20
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(15830..17230)
-----------------
DNA (1401bp)
protein (467aa)
Polysaccharide biosynthesis protein n=1 Tax=Methanobacterium formicicum DSM 3637 RepID=K2R1U2_METFO
polysaccharide biosynthesis protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
polysaccharide biosynthesis protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_21
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(17307..17687)
-----------------
DNA (381bp)
protein (127aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_22
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(17780..19681)
-----------------
DNA (1902bp)
protein (634aa)
Putative secreted protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Putative secreted protein id=2076415 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_4485_23
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(19700..21712)
-----------------
DNA (2013bp)
protein (671aa)
Peptidase S8 and S53, subtilisin, kexin, sedolisin (Fragment) n=1 Tax=uncultured bacterium RepID=K1XRZ6_9BACT
peptidase S8 and S53 subtilisin kexin sedolisin Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
peptidase S8 and S53 subtilisin kexin sedolisin
Displaying 23 items

View Taxonomy