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RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_1
R_SM2F11_48_13, SM2F11, Bacteria

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842..1132
DNA (291bp) protein (97aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_2
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

1676..1966
DNA (291bp) protein (97aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_3
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(2273..2785)
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Desulfovibrio magneticus (strain ATCC 700980 / DSM 13731 / RS-1) RepID=C4XMQ6_DESMR
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_4
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(3002..3430)
DNA (429bp) protein (143aa)
lspG; type II secretory pathway protein LspG; K02456 general secretion pathway protein G Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
seg 133..147 id=56714 bin=ACD43 species=ACD43 genus=ACD43 taxon_order=ACD43 taxon_class=ACD43 phylum=OD1 tax=ACD43 organism_group=OD1 (Parcubacteria) organism_desc=OD1
Type II secretion system protein G
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_5
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(3481..3855)
DNA (375bp) protein (125aa)
50S ribosomal protein L19 n=5 Tax=Pediococcus RepID=D2EI64_PEDAC
rplS; 50S ribosomal protein L19; K02884 large subunit ribosomal protein L19 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rplS; 50S ribosomal protein L19
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_6
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(3857..4480)
DNA (624bp) protein (208aa)
putative pseudouridine synthase; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
ribosomal large subunit pseudouridine synthase D (EC:5.4.99.-) id=15188673 bin=GWE1_Berkelbacteria_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
putative pseudouridine synthase
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_7
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(4477..5214)
DNA (738bp) protein (246aa)
trmD; tRNA (guanine-N(1)-)-methyltransferase Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
tRNA (guanine-N(1)-)-methyltransferase id=2185696 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
trmD; tRNA (guanine-N(1)-)-methyltransferase
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_8
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(5253..5585)
DNA (333bp) protein (111aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Holliday junction ATP-dependent DNA helicase RuvB id=3087585 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_9
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(5672..6064)
DNA (393bp) protein (131aa)
30S ribosomal protein S16; K02959 small subunit ribosomal protein S16 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
30S ribosomal protein S16 id=3544395 bin=GWA1_ZB2_49_26 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
30S ribosomal protein S16
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_10
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(6592..8799)
DNA (2208bp) protein (736aa)
Chromosome segregation protein SMC n=1 Tax=Turicibacter sp. PC909 RepID=D4W362_9FIRM id=8748 bin=ACD15 species=Turicibacter sanguinis genus=Turicibacter taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
smc; chromosome segregation protein SMC; K03529 chromosome segregation protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
smc; chromosome segregation protein SMC
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_11
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(8803..9063)
DNA (261bp) protein (87aa)
excinuclease ABC C subunit domain-containing protein; K07461 putative endonuclease Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
GIY-YIG catalytic domain protein id=2933997 bin=GWC1_OD1_38_17 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
excinuclease ABC C subunit domain-containing protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_12
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(9082..9765)
DNA (684bp) protein (228aa)
putative ribonuclease III (EC:3.1.26.3) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
putative ribonuclease III (EC:3.1.26.3)
hypothetical protein id=5801635 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_13
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(10046..11005)
DNA (960bp) protein (320aa)
transmembrane_regions 26..48 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
transmembrane_regions 26..48 id=129947 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_16410_14
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(11007..12890)
DNA (1884bp) protein (628aa)
ATP-dependent metalloprotease FtsH (EC:3.6.4.3); K03798 cell division protease FtsH [EC:3.4.24.-] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
ATP-dependent metalloprotease FtsH (EC:3.6.4.3)
ATP-dependent zinc metalloprotease FtsH id=3590936 bin=GWA2_CPR4_42_17 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
Displaying 14 items

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