ggKbase home page

RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158

Search features with annotation key words

Displaying items 1-30 of 65 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_1
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

176..733
-----------------
DNA (558bp)
protein (186aa)
paaX; repressor in ring oxydation complex/phenylacetic acid degradation pathway-like protein (paaX); K02616 phenylacetic acid degradation operon negative regulatory protein Tax=RIFCSPLOWO2_02_FULL_SM2
putative regulator; K02616 phenylacetic acid degradation operon negative regulatory protein id=86405 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
paaX; repressor in ring oxydation complex/phenylacetic acid degradation pathway-like protein (paaX)
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_2
GWD2_OD1_38_11, Parcubacteria, Bacteria

Not on your lists

1160..2866
-----------------
DNA (1707bp)
protein (569aa)
Tax=GWD2_OD1_38_11
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_3
R_SM2F11_43_23, SM2F11, Bacteria

Not on your lists

3019..3267
-----------------
DNA (249bp)
protein (83aa)
UPF0213 protein n=1 Tax=Staphylococcus simulans ACS-120-V-Sch1 RepID=K8N4L3_STASI
endo/excinuclease amino domain-containing protein; K07461 putative endonuclease Tax=RIFCSPHIGHO2_01_FULL_SM2F11_43_23_curated
GIY-YIG nuclease superfamily protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_4
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(3289..4029)
-----------------
DNA (741bp)
protein (247aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_5
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

4188..4385
-----------------
DNA (198bp)
protein (66aa)
cold-shock protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037364D4
cspB2; cold shock protein CspB; K03704 cold shock protein (beta-ribbon, CspA family) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_6
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

4414..5625
-----------------
DNA (1212bp)
protein (404aa)
Uncharacterized protein n=1 Tax=Sphaerobacter thermophilus (strain DSM 20745 / S 6022) RepID=D1C528_SPHTD id=5087779 bin=OP11_3 species=Sphaerobacter thermophilus genus=Sphaerobacter taxon_order=Sphaerobacterales taxon_class=Thermomicrobia phylum=Chloroflexi tax=OP11_3 organism_group=OP11 (Microgenomates) organism_desc=Complete genome
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_7
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

5615..5992
-----------------
DNA (378bp)
protein (126aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_8
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

5989..6243
-----------------
DNA (255bp)
protein (85aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_9
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

6403..8160
-----------------
DNA (1758bp)
protein (586aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-J21 RepID=UPI00036471D8
ABC transporter-like protein; K06147 ATP-binding cassette, subfamily B, bacterial Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_10
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


8153..9205
-----------------
DNA (1053bp)
protein (351aa)
gcp; putative O-sialoglycoprotein endopeptidase (EC:3.4.24.57); K01409 O-sialoglycoprotein endopeptidase [EC:3.4.24.57] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp id=3415445 bin=GWA2_CPR4_42_17 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_11
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


9211..11919
-----------------
DNA (2709bp)
protein (903aa)
valyl-tRNA synthetase (EC:6.1.1.9); K01873 valyl-tRNA synthetase [EC:6.1.1.9] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
valyl-tRNA synthetase (EC:6.1.1.9)
hypothetical protein id=5801621 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_12
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(11956..12117)
-----------------
DNA (162bp)
protein (54aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_13
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(12060..12245)
-----------------
DNA (186bp)
protein (62aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_14
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(12255..13268)
-----------------
DNA (1014bp)
protein (338aa)
hypothetical protein n=1 Tax=Hydrogenedentes bacterium JGI 0000039-J10 RepID=UPI000363996A
Fic/DOC family protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_15
R_SM2F11_46_14, SM2F11, Bacteria

Not on your lists

comp(13419..17312)
-----------------
DNA (3894bp)
protein (1298aa)
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] Tax=RIFCSPHIGHO2_01_FULL_SM2F11_46_14_curated
deg:DehalGT_0541 DNA-directed RNA polymerase, beta' subunit; K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6] id=95827 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
rpoC; DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_16
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(17316..20645)
-----------------
DNA (3330bp)
protein (1110aa)
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rpoB; DNA-directed RNA polymerase subunit beta (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta n=1 Tax=uncultured bacterium RepID=K2C0M7_9BACT
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_17
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

20995..21210
-----------------
DNA (216bp)
protein (72aa)
pol:Bpro_3038 integrase catalytic subunit Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
pol:Bpro_3038 integrase catalytic subunit id=86872 bin=ACD58 species=ACD58 genus=ACD58 taxon_order=ACD58 taxon_class=ACD58 phylum=ACD58 tax=ACD58 organism_group=ACD58 (Berkelbacteria) organism_desc=ACD58
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_18
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

21194..22231
-----------------
DNA (1038bp)
protein (346aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A411_9BACT
putative integrase, catalytic subunit Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
integrase, catalytic subunit
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_19
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(22313..22780)
-----------------
DNA (468bp)
protein (156aa)
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein id=5802456 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_20
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(22793..23119)
-----------------
DNA (327bp)
protein (109aa)
T-RNA-binding domain protein n=1 Tax=Korarchaeum cryptofilum (strain OPF8) RepID=B1L7G6_KORCO
tRNA-binding domain-containing protein; K06878 tRNA-binding protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
tRNA-binding domain-containing protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_21
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(23166..23909)
-----------------
DNA (744bp)
protein (248aa)
hypothetical protein n=1 Tax=SAR202 cluster bacterium SCGC AAA240-N13 RepID=UPI00035EF1AA
ABC-2 type transporter; K09686 antibiotic transport system permease protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
ABC-2 type transporter
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_22
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(23917..24831)
-----------------
DNA (915bp)
protein (305aa)
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI000367D182
ABC transporter; K09687 antibiotic transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
ABC transporter
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_23
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(24822..25178)
-----------------
DNA (357bp)
protein (119aa)
Universal bacterial protein YeaZ Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Universal bacterial protein YeaZ id=2169521 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_24
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(25181..26440)
-----------------
DNA (1260bp)
protein (420aa)
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13); K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=RIFCSPLOWO2_02_FU
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DAF1_9BACT
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_25
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(26443..27009)
-----------------
DNA (567bp)
protein (189aa)
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
ruvA; Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA id=16715 bin=ACD1 species=ACD1 genus=ACD1 taxon_order=ACD1 taxon_class=ACD1 phylum=OD1-i tax=ACD1 organism_group=OD1-i organism_desc=OD1-i
Holliday junction DNA helicase RuvA
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_26
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

27048..27179
-----------------
DNA (132bp)
protein (44aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_27
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

27340..29328
-----------------
DNA (1989bp)
protein (663aa)
uvrB; excinuclease ABC subunit B; K03702 excinuclease ABC subunit B Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
UvrABC system protein B id=2437692 bin=GWA1_Kazan_50_15 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWA1_Kazan_50_15 organism_group=Kazan organism_desc=Probably Kazan: candidate for curation
uvrB; excinuclease ABC subunit B
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_28
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

29344..29535
-----------------
DNA (192bp)
protein (64aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_29
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists


comp(29567..29797)
-----------------
DNA (231bp)
protein (77aa)
30S ribosomal protein S20 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
30S ribosomal protein S20 id=3914569 bin=GWF2_CPR3_35_18 species=ACD13 genus=ACD13 taxon_order=ACD13 taxon_class=ACD13 phylum=OP11 tax=GWF2_CPR3_35_18 organism_group=CPR3
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_1158_30
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(29927..32650)
-----------------
DNA (2724bp)
protein (908aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
tro:trd_0700 DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] id=96001 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
DNA polymerase I (EC:2.7.7.7)
Displaying items 1-30 of 65 in total

View Taxonomy