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RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_1
R_SM2F11_48_13, SM2F11, Bacteria

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comp(2..598)
-----------------
DNA (597bp)
protein (199aa)
hppA; membrane-bound proton-translocating pyrophosphatase; K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
V-type H(+)-translocating pyrophosphatase (EC:3.6.1.1)
pyrophosphatase n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B76B31
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_2
R_SM2F11_48_13, SM2F11, Bacteria

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765..1133
-----------------
DNA (369bp)
protein (123aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_3
R_SM2F11_48_13, SM2F11, Bacteria

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comp(1312..1578)
-----------------
DNA (267bp)
protein (89aa)
putative RNA-binding protein RbpA Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
rnp-1 like RNA-binding protein id=5098363 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
putative RNA-binding protein RbpA
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_4
R_SM2F11_48_13, SM2F11, Bacteria

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comp(1715..2182)
-----------------
DNA (468bp)
protein (156aa)
tRNA/rRNA methyltransferase (SpoU) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
tRNA/rRNA methyltransferase SpoU id=15189825 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
tRNA/rRNA methyltransferase (SpoU)
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_5
R_SM2F11_48_13, SM2F11, Bacteria

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comp(2201..2446)
-----------------
DNA (246bp)
protein (82aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_6
R_SM2F11_48_13, SM2F11, Bacteria

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comp(2449..3318)
-----------------
DNA (870bp)
protein (290aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YFW2_9BACT
Dgri_bt; GH24003 gene product from transcript GH24003-RA Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
putative prophage LambdaBa04, tape measure protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_7
R_SM2F11_48_13, SM2F11, Bacteria

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comp(3327..3665)
-----------------
DNA (339bp)
protein (113aa)
Putative uncharacterized protein n=1 Tax=sediment metagenome RepID=D9PKW5_9ZZZZ
hypothetical protein
Putative uncharacterized protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_8
unknown

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4035..4367
-----------------
DNA (333bp)
protein (111aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_9
unknown

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comp(4227..5414)
-----------------
DNA (1188bp)
protein (396aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_10

Not on your lists

5787..7271
-----------------
DNA (1485bp)
protein (495aa)
Recombinase n=1 Tax=Hippea maritima (strain ATCC 700847 / DSM 10411 / MH2) RepID=F2LVL3_HIPMA
Recombinase {ECO:0000313|EMBL:KKT61104.1}; TaxID=1618648 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Giovannonibacteria) bacterium GW2011_GWA2_44_26.;"
recombinase
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_11
R_SM2F11_48_13, SM2F11, Bacteria

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comp(7382..7687)
-----------------
DNA (306bp)
protein (102aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_12
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(7697..7825)
-----------------
DNA (129bp)
protein (43aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_13
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

7857..8510
-----------------
DNA (654bp)
protein (218aa)
flavodoxin reductase family protein
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_14
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

8528..8674
-----------------
DNA (147bp)
protein (49aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_15
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

comp(8777..9100)
-----------------
DNA (324bp)
protein (108aa)
Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_16
R_SM2F11_48_13, SM2F11, Bacteria

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9150..10589
-----------------
DNA (1440bp)
protein (480aa)
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase (EC:2.7.8.6)
Putative glycosyltransferase id=1924290 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_17
R_SM2F11_46_14, SM2F11, Bacteria

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10594..11676
-----------------
DNA (1083bp)
protein (361aa)
glycosyl transferase group 1 Tax=RIFCSPHIGHO2_01_FULL_SM2F11_46_14_curated
hypothetical protein id=5801652 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
group 1 glycosyl transferase
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_18
R_SM2F11_48_13, SM2F11, Bacteria

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11660..12763
-----------------
DNA (1104bp)
protein (368aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
glycosyl transferase group 1 id=95872 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
group 1 glycosyl transferase
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_19
R_SM2F11_48_13, SM2F11, Bacteria

Not on your lists

12760..13848
-----------------
DNA (1089bp)
protein (363aa)
group 1 glycosyl transferase Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
group 1 glycosyl transferase id=5090604 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
glycosyl transferase, group 1
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_20
R_SM2F11_48_13, SM2F11, Bacteria

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13845..14951
-----------------
DNA (1107bp)
protein (369aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227); K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase id=2169484 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_21
R_SM2F11_48_13, SM2F11, Bacteria

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14896..15879
-----------------
DNA (984bp)
protein (328aa)
patatin; K07001 NTE family protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein; K07001 NTE family protein id=12496016 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
patatin
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_22
R_SM2F11_48_13, SM2F11, Bacteria

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15876..16622
-----------------
DNA (747bp)
protein (249aa)
hypothetical protein n=1 Tax=Poribacteria bacterium WGA-3G RepID=UPI0003B6C257
hypothetical protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_23
R_SM2F11_48_13, SM2F11, Bacteria

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16615..17871
-----------------
DNA (1257bp)
protein (419aa)
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8) Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
tte:TTE2575 murC; UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8); K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] id=53758 bin=ACD41 species=ACD41 genus=ACD41 taxon_order=ACD41 taxon_class=ACD41 phylum=OD1 tax=ACD41 organism_group=OD1 (Parcubacteria) organism_desc=OD1
UDP-N-acetylmuramate--L-alanine ligase (EC:6.3.2.8)
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_24
R_SM2F11_48_13, SM2F11, Bacteria

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17875..18798
-----------------
DNA (924bp)
protein (308aa)
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
UDP-N-acetylmuramate dehydrogenase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Geobacter sp. M18 RepID=C6MV99_9DELT id=36182 bin=ACD30 species=Geobacter sp. M18 genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=ACD30 organism_group=OP11 (Microgenomates) organism_desc=OP11
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_25
R_SM2F11_48_13, SM2F11, Bacteria

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18776..19204
-----------------
DNA (429bp)
protein (143aa)
Ribosomal subunit interface protein n=19 Tax=Francisella tularensis RepID=A4IX16_FRATW
yfiA; ribosomal subunit interface protein; K05808 putative sigma-54 modulation protein Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
yhbH; ribosome hibernation protein YhbH
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_26
R_SM2F11_48_13, SM2F11, Bacteria

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19273..20652
-----------------
DNA (1380bp)
protein (460aa)
arginine decarboxylase; K01585 arginine decarboxylase [EC:4.1.1.19] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
Arginine decarboxylase n=1 Tax=planctomycete KSU-1 RepID=I3IJ25_9PLAN
orn/dap/arg decarboxylase 2
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_27
R_SM2F11_48_13, SM2F11, Bacteria

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20663..21508
-----------------
DNA (846bp)
protein (282aa)
speB1; arginase (EC:3.5.3.1); K01480 agmatinase [EC:3.5.3.11] Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
speB1; arginase (EC:3.5.3.1)
Arginase n=2 Tax=Pelagibacter ubique RepID=Q4FP61_PELUB
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_28
R_SM2F11_46_14, SM2F11, Bacteria

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21510..22523
-----------------
DNA (1014bp)
protein (338aa)
deoxyhypusine synthase; K00809 deoxyhypusine synthase [EC:2.5.1.46] Tax=RIFCSPHIGHO2_01_FULL_SM2F11_46_14_curated
Deoxyhypusine synthase id=3730390 bin=GWB1_Deltaproteobacteria_rel_55_8 species=Cystobacter fuscus genus=Cystobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB1_Deltaproteobacteria_rel_55_8 organism_group=Deltaproteobacteria organism_desc=Good
deoxyhypusine synthase
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_29
R_SM2F11_48_13, SM2F11, Bacteria

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22527..23147
-----------------
DNA (621bp)
protein (207aa)
Acyl-CoA thioesterase I Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
GDSL-like Lipase/Acylhydrolase family protein id=1901318 bin=GWD2_Deltaproteobacteria_55_8 species=Xenococcus sp. PCC 7305 genus=Xenococcus taxon_order=Pleurocapsales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
GDSL family lipase
RIFCSPLOWO2_01_FULL_CPR_48_57_rifcsplowo2_01_scaffold_3067_30
R_SM2F11_48_13, SM2F11, Bacteria

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comp(23483..24787)
-----------------
DNA (1305bp)
protein (435aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000372902F
peptidase M23 Tax=RIFCSPLOWO2_02_FULL_SM2F11_48_13_curated
peptidase M23
Displaying items 1-30 of 37 in total

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