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RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186_1
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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131..598
DNA (468bp) protein (156aa)
Tetratricopeptide TPR_2 repeat protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q023J3_SOLUE
hypothetical protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186_2
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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709..2868
DNA (2160bp) protein (720aa)
carboxyl-terminal processing protease (EC:3.4.21.102)
Peptidase S41A, C-terminal protease n=2 Tax=sulfur-oxidizing symbionts RepID=G2DHJ3_9GAMM
C-terminal processing peptidase Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186_3
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(2869..3000)
DNA (132bp) protein (44aa)
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186_4
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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3043..3939
DNA (897bp) protein (299aa)
icd1; isocitrate dehydrogenase (EC:1.1.1.41); K00030 isocitrate dehydrogenase (NAD+) [EC:1.1.1.41] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
icd1; isocitrate dehydrogenase (EC:1.1.1.41)
isocitrate dehydrogenase n=1 Tax=Mesorhizobium sp. WSM4349 RepID=UPI00036617B3
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186_5
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3940..4869)
DNA (930bp) protein (310aa)
NAD-dependent epimerase/dehydratase; K02377 GDP-L-fucose synthase [EC:1.1.1.271] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
GDP-L-fucose synthase n=1 Tax=Methanosalsum zhilinae (strain DSM 4017 / NBRC 107636 / OCM 62 / WeN5) RepID=F7XPV7_METZD
NAD-dependent epimerase/dehydratase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186_6
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(4914..6032)
DNA (1119bp) protein (373aa)
GDP-mannose 4,6-dehydratase; K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
GDP-mannose 4,6-dehydratase n=1 Tax=Thiobacillus denitrificans RepID=UPI0003744ED4
GDP-mannose 4,6-dehydratase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186_7
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(6039..7508)
DNA (1470bp) protein (490aa)
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (EC:2.7.7.13); K16011 mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8] Tax=RifCSPlowO
mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase (EC:2.7.7.13)
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KB73_NITWC
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186_8
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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7593..8537
DNA (945bp) protein (315aa)
putative deacetylase, histone deacetylase family Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Putative Deacetylase, histone deacetylase family id=3714594 bin=GWA2_OP3_52_12 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
putative deacetylase, histone deacetylase family
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186_9
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(8548..9006)
DNA (459bp) protein (153aa)
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186_10
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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9244..9765
DNA (522bp) protein (174aa)
Putative type IV pilus assembly protein PilZ n=1 Tax=Teredinibacter turnerae (strain ATCC 39867 / T7901) RepID=C5BQH0_TERTT
type IV pilus assembly protein PilZ Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
type IV pilus assembly protein PilZ
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186_11
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9779..9976
DNA (198bp) protein (66aa)
Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_19186_12
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10075..10572)
DNA (498bp) protein (166aa)
msrA; peptide methionine sulfoxide reductase (EC:1.8.4.11) Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
msrA; peptide methionine sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Gloeobacter kilaueensis JS1 RepID=U5QLQ4_9CYAN
Displaying 12 items

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