ggKbase home page

RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_1
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..556)
-----------------
DNA (555bp)
protein (185aa)
Uroporphyrinogen III synthase HEM4 n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IR06_9GAMM
uroporphyrinogen III synthase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_2
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(549..1478)
-----------------
DNA (930bp)
protein (310aa)
hydroxymethylbilane synthase (EC:2.5.1.61)
porphobilinogen deaminase n=1 Tax=Psychromonas ossibalaenae RepID=UPI00037FA43A
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_3
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1596..2540
-----------------
DNA (945bp)
protein (315aa)
gshB; glutathione synthetase (EC:6.3.2.3)
Glutathione synthetase n=1 Tax=Hahella chejuensis (strain KCTC 2396) RepID=Q2SPH2_HAHCH
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_4
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2548..3558
-----------------
DNA (1011bp)
protein (337aa)
TonB family protein n=1 Tax=Beggiatoa alba B18LD RepID=I3CKN3_9GAMM
TonB family protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_5
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3668..4228
-----------------
DNA (561bp)
protein (187aa)
hypothetical protein n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00036BC7FC
putative transcriptional regulator
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_6
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4225..4668
-----------------
DNA (444bp)
protein (148aa)
Putative Holliday junction resolvase n=1 Tax=Pseudomonas pseudoalcaligenes KF707 RepID=L8MPX8_PSEPS
Holliday junction resolvase-like protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_7
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4649..5146
-----------------
DNA (498bp)
protein (166aa)
uracil phosphoribosyltransferase (EC:2.4.2.9)
uracil phosphoribosyltransferase n=1 Tax=Thioalkalivibrio sp. ALJ17 RepID=UPI00037E5B9B
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_8
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5143..6138
-----------------
DNA (996bp)
protein (332aa)
aspartate carbamoyltransferase (EC:2.1.3.2)
Aspartate carbamoyltransferase n=1 Tax=Beggiatoa alba B18LD RepID=I3CKN6_9GAMM
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_9
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6122..7402
-----------------
DNA (1281bp)
protein (427aa)
Dihydroorotase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C4Y9_NITHN
dihydroorotase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_10
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7408..8295
-----------------
DNA (888bp)
protein (296aa)
TonB box domain-containing protein n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G1X9_9GAMM
dihydroorotate dehydrogenase electron transfer subunit
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_11
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8717..9127)
-----------------
DNA (411bp)
protein (137aa)
Type IV pilus assembly PilZ n=1 Tax=Accumulibacter phosphatis (strain UW-1) RepID=C7RIK2_ACCPU
type IV pilus assembly PilZ
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_12
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9217..10275)
-----------------
DNA (1059bp)
protein (353aa)
Pilus retraction protein PilT n=1 Tax=Beggiatoa alba B18LD RepID=I3CCG9_9GAMM
pilus retraction protein PilT
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_13
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10329..11504)
-----------------
DNA (1176bp)
protein (392aa)
Pilus retraction protein PilT n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AAP1_9PROT
pilus retraction protein PilT
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_14
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11537..12571)
-----------------
DNA (1035bp)
protein (345aa)
Twitching motility protein PilT n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GP71_THISH
twitching motility protein PilT
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_15
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12761..13444
-----------------
DNA (684bp)
protein (228aa)
Alanine racemase domain protein n=3 Tax=Azotobacter vinelandii RepID=C1DI71_AZOVD
alanine racemase domain protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_16
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13520..14350
-----------------
DNA (831bp)
protein (277aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Delta 1-pyrroline-5-carboxylate reductase n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BSA7_9GAMM
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_17
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14353..14949
-----------------
DNA (597bp)
protein (199aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BSA6_9GAMM
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_18
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14946..15257
-----------------
DNA (312bp)
protein (104aa)
UPF0235 protein Nhal_3796 n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3A4_NITHN
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_19
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15362..15802
-----------------
DNA (441bp)
protein (147aa)
Uncharacterized protein n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BGP9_9GAMM
conserved hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_20
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15816..16589)
-----------------
DNA (774bp)
protein (258aa)
exodeoxyribonuclease III Xth (EC:4.2.99.18)
Exodeoxyribonuclease ExoA n=1 Tax=Methyloglobulus morosus KoM1 RepID=V5C3G6_9GAMM
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_21
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16709..17356
-----------------
DNA (648bp)
protein (216aa)
orotate phosphoribosyltransferase (EC:2.4.2.10)
Orotate phosphoribosyltransferase n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XGL1_METNJ
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_22
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17457..18077
-----------------
DNA (621bp)
protein (207aa)
Putative uncharacterized protein n=2 Tax=sulfur-oxidizing symbionts RepID=G2DBC8_9GAMM
conserved hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_23
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18088..18675)
-----------------
DNA (588bp)
protein (196aa)
hypothetical protein n=1 Tax=Gilvimarinus chinensis RepID=UPI00036F17AD
slmA; division inhibitor protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_24
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18688..19602)
-----------------
DNA (915bp)
protein (305aa)
Acetylglutamate kinase n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RRI4_ALLVD
acetylglutamate kinase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_25
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19684..22350)
-----------------
DNA (2667bp)
protein (889aa)
phosphomannomutase (EC:5.4.2.8)
Phosphoglucomutase n=1 Tax=Methylobacter tundripaludum SV96 RepID=G3IVY8_9GAMM
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_26
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22381..22833)
-----------------
DNA (453bp)
protein (151aa)
deoxyuridine 5''''-triphosphate nucleotidohydrolase n=1 Tax=Methylobacter marinus RepID=UPI00036E0334
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_27
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22805..24019)
-----------------
DNA (1215bp)
protein (405aa)
phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase (EC:4.1.1.36 6.3.2.5)
Phosphopantothenoylcysteine decarboxylase/phosphopantothenate-cysteine ligase n=1 Tax=uncultured bacterium RepID=K2AW65_9BACT
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_28
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24129..24803
-----------------
DNA (675bp)
protein (225aa)
DNA repair protein RadC n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3K7_NITHN
DNA repair protein RadC
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_29
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


24914..25111
-----------------
DNA (198bp)
protein (66aa)
50S ribosomal protein L28 n=1 Tax=Methylophaga frappieri (strain ATCC BAA-2434 / DSM 25690 / JAM7) RepID=I1YHE5_METFJ
50S ribosomal protein L28
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_5255_30
RBG_19FT_COMBO_Gammaproteobacteria_61_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists


25116..25283
-----------------
DNA (168bp)
protein (56aa)
50S ribosomal protein L33 n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GUR1_THISH
rpmG; 50S ribosomal subunit protein L33
Displaying items 1-30 of 33 in total

View Taxonomy