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RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805

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Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_1
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

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2..667
DNA (666bp) protein (222aa)
rluD; ribosomal large subunit pseudouridine synthase D; K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
23S rRNA pseudouridine synthase D n=1 Tax=Halomonas sp. PBN3 RepID=U7P6V6_9GAMM
ribosomal large subunit pseudouridine synthase D
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_2
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

648..1403
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BYS2_9BACT
YfiH; K05810 conserved hypothetical protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
multi-copper polyphenol oxidoreductase, laccase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_3
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1484..2905
DNA (1422bp) protein (474aa)
Glu/Leu/Phe/Val dehydrogenase dimerisation region; K00261 glutamate dehydrogenase (NAD(P)+) [EC:1.4.1.3] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Glutamate dehydrogenase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G1M0_9GAMM
Glu/Leu/Phe/Val dehydrogenase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_4
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3165..5738
DNA (2574bp) protein (858aa)
ATP-dependent chaperone ClpB n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GN47_THISH
ATP-dependent chaperone ClpB; K03695 ATP-dependent Clp protease ATP-binding subunit ClpB Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
ATP-dependent chaperone ClpB
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_5
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5910..7634
DNA (1725bp) protein (575aa)
Type IV-A pilus assembly ATPase PilB n=1 Tax=Beggiatoa alba B18LD RepID=I3CJL4_9GAMM
type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
type II secretory protein GspE
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_6
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7640..8860
DNA (1221bp) protein (407aa)
Type II secretion system F domain protein n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KA58_NITWC
type II secretion system F domain-containing protein; K02653 type IV pilus assembly protein PilC Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
type II secretion system F domain-containing protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_7
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9028..9849
DNA (822bp) protein (274aa)
pilD; prepilin peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Type 4 prepilin-like proteins leader peptide-processing enzyme n=1 Tax=Methylophaga thiooxydans DMS010 RepID=C0N8V2_9GAMM
pilD; prepilin peptidase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_8
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9856..10464
DNA (609bp) protein (203aa)
dephospho-CoA kinase (EC:2.7.1.24); K00859 dephospho-CoA kinase [EC:2.7.1.24] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
dephospho-CoA kinase (EC:2.7.1.24)
dephospho-CoA kinase n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B5948D
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_9
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10518..11288
DNA (771bp) protein (257aa)
Cell division protein ZapD n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C3F6_NITHN
hypothetical protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_10
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11739..12728)
DNA (990bp) protein (330aa)
mutator MutT protein; K03574 7,8-dihydro-8-oxoguanine triphosphatase [EC:3.6.1.-] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Mutator MutT protein n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KA54_NITWC
mutator MutT protein
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_11
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12815..14035)
DNA (1221bp) protein (407aa)
Glutamate N-acetyltransferase / N-acetylglutamate synthase (EC:2.3.1.35 2.3.1.1); K00620 glutamate N-acetyltransferase / amino-acid N-acetyltransferase [EC:2.3.1.35 2.3.1.1] Tax=RifCSPlowO2_12_Gammapr
glutamate N-acetyltransferase / N-acetylglutamate synthase (EC:2.3.1.35 2.3.1.1)
Arginine biosynthesis bifunctional protein ArgJ n=1 Tax=Methylophaga nitratireducenticrescens (strain ATCC BAA-2433 / DSM 25689 / JAM1) RepID=I1XHK0_METNJ
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_12
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14210..16906)
DNA (2697bp) protein (899aa)
Protein translocase subunit SecA n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BW36_NITHN
preprotein translocase subunit SecA; K03070 preprotein translocase subunit SecA Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
preprotein translocase subunit SecA
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_13
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16982..17914)
DNA (933bp) protein (311aa)
Peptidase M23B n=1 Tax=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) RepID=Q3J798_NITOC
peptidase M23B Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
peptidase M23B
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_14
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17957..18436
DNA (480bp) protein (160aa)
Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BUD5_9GAMM
hypothetical protein
Putative uncharacterized protein Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_15
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18446..19357)
DNA (912bp) protein (304aa)
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase n=1 Tax=Dyella japonica RepID=UPI0002E5E126
lpxC; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_16
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19470..20621)
DNA (1152bp) protein (384aa)
Cell division protein FtsZ n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G0S8_9GAMM
cell division protein FtsZ; K03531 cell division protein FtsZ Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
cell division protein FtsZ
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_17
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20660..21895)
DNA (1236bp) protein (412aa)
Cell division protein ftsA n=1 Tax=Spiribacter salinus M19-40 RepID=R4V8Z9_9GAMM
cell division protein FtsA Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
cell division protein FtsA
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_18
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21898..22680)
DNA (783bp) protein (261aa)
Cell division protein FtsQ n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8K8Z1_NITWC
cell division protein FtsQ; K03589 cell division protein FtsQ Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
cell division protein FtsQ
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_19
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22687..23634)
DNA (948bp) protein (316aa)
D-alanine--D-alanine ligase n=1 Tax=endosymbiont of Tevnia jerichonana (vent Tica) RepID=G2FET0_9GAMM
D-alanine--D-alanine ligase Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
D-alanine--D-alanine ligase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_20
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23664..24611)
DNA (948bp) protein (316aa)
murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158); K00075 UDP-N-acetylmuramate dehydrogenase [EC:1.1.1.158] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
murB; UDP-N-acetylenolpyruvoylglucosamine reductase (EC:1.1.1.158)
UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BQY7_9GAMM
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_21
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24627..26042)
DNA (1416bp) protein (472aa)
UDP-N-acetylmuramate--L-alanine ligase; K01924 UDP-N-acetylmuramate--alanine ligase [EC:6.3.2.8] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
murC; UDP-N-acetylmuramate--alanine ligase (EC:6.3.2.8)
UDP-N-acetylmuramate--L-alanine ligase n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G0S3_9GAMM
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_22
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26032..27120)
DNA (1089bp) protein (363aa)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227); K02563 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-UDP N-acetylglucosamine transferase (EC:2.4.1.227)
UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BX16_9GAMM
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_23
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27110..28282)
DNA (1173bp) protein (391aa)
Lipid II flippase FtsW n=1 Tax=Beggiatoa sp. PS RepID=A7C084_9GAMM
cell division protein FtsW; K03588 cell division protein FtsW Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
cell division protein FtsW
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_24
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28328..29707)
DNA (1380bp) protein (460aa)
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (EC:6.3.2.9); K01925 UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
murD; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=1 Tax=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) RepID=Q0A6K0_ALKEH
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_25
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29719..30801)
DNA (1083bp) protein (361aa)
mraY; phospho-N-acetylmuramoyl-pentapeptide transferase (EC:2.7.8.13) Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
mraY; phospho-N-acetylmuramoyl-pentapeptide transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=2 Tax=Marinobacter RepID=H8W658_MARHY
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_26
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(30801..32153)
DNA (1353bp) protein (451aa)
UDP-N-acetylmuramyl-tripeptide synthetase (EC:6.3.2.10); K01929 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [EC:6.3.2.10] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase n=1 Tax=Beggiatoa sp. PS RepID=A7C2M3_9GAMM
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_27
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32150..33670)
DNA (1521bp) protein (507aa)
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13); K01928 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [EC:6.3.2.13] Tax=RifCSPlowO2_12_Ga
murE; UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase (EC:6.3.2.13)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=7 Tax=Coxiella burnetii RepID=MURE_COXBU
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_28
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(33670..35397)
DNA (1728bp) protein (576aa)
peptidoglycan glycosyltransferase (EC:2.4.1.129); K03587 cell division protein FtsI (penicillin-binding protein 3) [EC:2.4.1.129] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
peptidoglycan glycosyltransferase (EC:2.4.1.129)
Peptidoglycan glycosyltransferase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GMM3_THISH
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_29
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35394..35654)
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Thioalkalivibrio RepID=UPI0003799CF6
ftsL_[H]; Cell division protein FtsL Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
cell division protein FtsL
RIFCSPLOWO2_01_FULL_Gammaproteobacteria_47_190_rifcsplowo2_01_scaffold_805_30
RLO_Gammaproteobacteria_47_11, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(35651..36646)
DNA (996bp) protein (332aa)
rRNA small subunit methyltransferase H; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199] Tax=RifCSPlowO2_12_Gammaproteobacteria_47_11_curated
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Methylophaga lonarensis MPL RepID=M7PHI0_9GAMM
rRNA small subunit methyltransferase H
Displaying items 1-30 of 56 in total

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