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RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_1
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..390
DNA (390bp) protein (130aa)
TRAP dicarboxylate transporter subunit DctM Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
TRAP dicarboxylate transporter subunit DctM id=12496656 bin=THIO_MID species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
TRAP dicarboxylate transporter subunit DctM
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_2
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(498..1622)
DNA (1125bp) protein (375aa)
transporter, periplasmic component Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Transporter, periplasmic component id=1329928 bin=GWE1_T_denit_62_9 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_T_denit_62_9 organism_group=Betaproteobacteria organism_desc=exp 2.9 Mb
transporter, periplasmic component
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_3
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1670..2386)
DNA (717bp) protein (239aa)
diguanylate cyclase n=1 Tax=Desulfurobacterium sp. TC5-1 RepID=UPI0003B48DEC
diguanylate cyclase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
diguanylate cyclase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_4
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2727..4892)
DNA (2166bp) protein (722aa)
Superfamily I DNA and RNA helicase n=1 Tax=Cycloclasticus zancles 7-ME RepID=S5TU07_9GAMM
Superfamily I DNA and RNA helicase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
uvrD; DNA-dependent helicase II
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_5
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5002..5247
DNA (246bp) protein (82aa)
Prevent-host-death family protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLI8_9BACT
prevent-host-death family protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
prevent-host-death family protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_6
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5244..5630
DNA (387bp) protein (129aa)
PilT-like protein n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MLI7_9BACT
PilT-like protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
PilT-like protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_7
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6477..8312)
DNA (1836bp) protein (612aa)
glucosamine/fructose-6-phosphate aminotransferase; K00820 glucosamine--fructose-6-phosphate aminotransferase (isomerizing) [EC:2.6.1.16] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C416_NITHN
glucosamine/fructose-6-phosphate aminotransferase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8422..9792)
DNA (1371bp) protein (457aa)
UDP-N-acetylglucosamine pyrophosphorylase; K04042 bifunctional UDP-N-acetylglucosamine pyrophosphorylase / Glucosamine-1-phosphate N-acetyltransferase [EC:2.7.7.23 2.3.1.157] Tax=RIFCSPHIGHO2_12_FULL_
Bifunctional protein GlmU n=1 Tax=Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / D) RepID=D3RUX1_ALLVD
UDP-N-acetylglucosamine pyrophosphorylase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_9
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10053..10538)
DNA (486bp) protein (162aa)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ACP6_9PROT
FKBP-type peptidylprolyl isomerase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
FKBP-type peptidylprolyl isomerase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10574..10996)
DNA (423bp) protein (141aa)
ATP synthase F1 subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ATP synthase epsilon chain n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C418_NITHN
ATP synthase F1 subunit epsilon
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_11
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11133..12509)
DNA (1377bp) protein (459aa)
atpD-1; ATP synthase F0F1 subunit beta (EC:3.6.3.14); K02112 F-type H+-transporting ATPase subunit beta [EC:3.6.3.14] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
atpD-1; ATP synthase F0F1 subunit beta (EC:3.6.3.14)
ATP synthase subunit beta n=1 Tax=Methylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) RepID=ATPB_METCA
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12652..13518)
DNA (867bp) protein (289aa)
ATP synthase F1 subunit gamma; K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ATP synthase gamma chain n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C420_NITHN
ATP synthase F1 subunit gamma
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_13
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13672..15213)
DNA (1542bp) protein (514aa)
ATP synthase F0F1 subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ATP synthase F0F1 subunit alpha (EC:3.6.3.14)
ATP synthase subunit alpha n=2 Tax=Nitrosococcus oceani RepID=ATPA_NITOC
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_14
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15359..15652)
DNA (294bp) protein (98aa)
atpH; F0F1 ATP synthase subunit delta (EC:3.6.3.14); K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ATP synthase subunit delta n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G4P2_9GAMM
ATP synthase F0F1 subunit delta
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_15
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15681..15884)
DNA (204bp) protein (68aa)
atpH; F0F1 ATP synthase subunit delta (EC:3.6.3.14); K02113 F-type H+-transporting ATPase subunit delta [EC:3.6.3.14] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ATP synthase subunit delta n=1 Tax=Nitrosospira sp. APG3 RepID=M5DK73_9PROT
ATP synthase F1 subunit delta
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15898..16368)
DNA (471bp) protein (157aa)
F-type H+-transporting ATP synthase subunit B (EC:3.6.3.14) Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
F-type H+-transporting ATP synthase subunit B (EC:3.6.3.14)
ATP synthase subunit b n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ADZ2_9PROT
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_17
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16412..16645)
DNA (234bp) protein (78aa)
ATP synthase subunit a n=2 Tax=sulfur-oxidizing symbionts RepID=G2D9T5_9GAMM
ATP synthase subunit C Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ATP synthase subunit C
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_18
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16683..17525)
DNA (843bp) protein (281aa)
ATP synthase subunit a n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ABK3_9PROT
ATP synthase F0, A subunit Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ATP synthase F0, A subunit
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_19
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17672..18022)
DNA (351bp) protein (117aa)
ATP synthase I chain n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C426_NITHN
ATP synthase I chain; K02116 ATP synthase protein I Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ATP synthase I chain
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_20
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18388..18828)
DNA (441bp) protein (147aa)
hypothetical protein n=1 Tax=Nitrospina sp. AB-629-B06 RepID=UPI00036957F7
hypothetical protein; K13582 localization factor PodJL Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_21
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18898..19761)
DNA (864bp) protein (288aa)
Chromosome segregation DNA-binding protein n=2 Tax=Nitrosococcus oceani RepID=Q3J6M3_NITOC
ParB-like partition protein; K03497 chromosome partitioning protein, ParB family Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
ParB-like partition protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_22
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20030..20806)
DNA (777bp) protein (259aa)
Cobyrinic acid a,c-diamide synthase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6ADZ5_9PROT
cobyrinic acid a,c-diamide synthase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
cobyrinic acid a,c-diamide synthase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_23
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20832..21455)
DNA (624bp) protein (208aa)
Ribosomal RNA small subunit methyltransferase G n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6APH7_9PROT
16S rRNA methyltransferase GidB Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
16S rRNA methyltransferase GidB
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_24
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21594..22070
DNA (477bp) protein (159aa)
hypothetical protein n=1 Tax=gamma proteobacterium SCGC AAA076-D13 RepID=UPI00037A2B4D
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_25
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22233..22868)
DNA (636bp) protein (212aa)
Putative uncharacterized protein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CR51_SIDLE
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_26
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22951..24825)
DNA (1875bp) protein (625aa)
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG n=1 Tax=Thiothrix nivea DSM 5205 RepID=I3BWW3_9GAMM
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA; K03495 tRNA uridine 5-carboxymethylaminomethyl modification enzyme Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
gidA; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_27
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25034..25969
DNA (936bp) protein (312aa)
moxR1; MoxR protein; K03924 MoxR-like ATPase [EC:3.6.3.-] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
MoxR-like ATPase n=1 Tax=Beggiatoa alba B18LD RepID=I3CCG0_9GAMM
moxR1; MoxR protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_28
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26066..26989
DNA (924bp) protein (308aa)
Uncharacterized protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AA24_9PROT
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_10784_29
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26986..28845
DNA (1860bp) protein (620aa)
Transglutaminase n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6AKI4_9PROT
transglutaminase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
transglutaminase
Displaying 29 items

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