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RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_1
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

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161..910
DNA (750bp) protein (250aa)
Probable transcriptional regulatory protein ECTPHS_02154 n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G0X6_9GAMM
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_2
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

910..1446
DNA (537bp) protein (179aa)
ruvC; crossover junction endodeoxyribonuclease RuvC; K01159 crossover junction endodeoxyribonuclease RuvC [EC:3.1.22.4] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Crossover junction endodeoxyribonuclease RuvC n=1 Tax=Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) RepID=D4ZKX4_SHEVD
ruvC; crossover junction endodeoxyribonuclease RuvC
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_3
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1443..2045
DNA (603bp) protein (201aa)
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Holliday junction ATP-dependent DNA helicase RuvA n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G0X8_9GAMM
ruvA; Holliday junction DNA helicase RuvA
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_4
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2140..3183
DNA (1044bp) protein (348aa)
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Holliday junction ATP-dependent DNA helicase RuvB n=2 Tax=Allochromatium vinosum RepID=D3RSP6_ALLVD
ruvB; holliday junction helicase, subunit B
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_5
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3291..3707
DNA (417bp) protein (139aa)
tol-pal system-associated acyl-CoA thioesterase; K07107 acyl-CoA thioester hydrolase [EC:3.1.2.-] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
4-hydroxybenzoyl-CoA thioesterase n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B3CA0D
tol-pal system-associated acyl-CoA thioesterase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_6
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3711..4406
DNA (696bp) protein (232aa)
Protein TolQ n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C4W7_NITHN
protein TolQ; K03562 biopolymer transport protein TolQ Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
protein TolQ
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_7
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4409..4828
DNA (420bp) protein (140aa)
Biopolymer transport protein n=3 Tax=Cycloclasticus RepID=S5T9S1_9GAMM
Biopolymer transport protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Biopolymer transport protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4975..5739
DNA (765bp) protein (255aa)
Putative uncharacterized protein n=1 Tax=Methylophaga aminisulfidivorans MP RepID=F5SXU7_9GAMM
TonB-like protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
TonB-like protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_9
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5743..7173
DNA (1431bp) protein (477aa)
translocation protein TolB n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B313ED
Tol-Pal system beta propeller repeat-containing protein TolB; K03641 TolB protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
biopolymer transport protein TolB
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_10
RBG_16_Gamma2_65_34_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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7177..7701
DNA (525bp) protein (175aa)
Peptidoglycan-associated lipoprotein n=1 Tax=Sideroxydans lithotrophicus (strain ES-1) RepID=D5CMS5_SIDLE
peptidoglycan-associated lipoprotein; K03640 peptidoglycan-associated lipoprotein Tax=RBG_16_Gamma2_65_34_curated
peptidoglycan-associated lipoprotein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_11
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7716..8507
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GUI7_THISH
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8511..9203
DNA (693bp) protein (231aa)
7-carboxy-7-deazaguanine synthase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5C4X3_NITHN
radical SAM protein; K10026 queuosine biosynthesis protein QueE Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
radical SAM protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_13
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9187..9876
DNA (690bp) protein (230aa)
7-cyano-7-deazaguanine synthase n=1 Tax=endosymbiont of unidentified scaly snail isolate Monju RepID=S6BTY1_9GAMM
exsB; ExsB protein; K06920 queuosine biosynthesis protein QueC Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
queuosine biosynthesis protein QueC
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_14
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9983..10339
DNA (357bp) protein (119aa)
DsrE family protein; K07235 tRNA 2-thiouridine synthesizing protein D [EC:2.8.1.-] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
DsrE family protein n=1 Tax=uncultured bacterium RepID=C5JBI1_9BACT
DsrE family protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_15
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10354..10755
DNA (402bp) protein (134aa)
DsrE family protein n=1 Tax=uncultured bacterium RepID=C5JBI0_9BACT
DsrE family protein; K07236 tRNA 2-thiouridine synthesizing protein C Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
DsrE family protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_16
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10765..11058
DNA (294bp) protein (98aa)
DsrH family protein n=1 Tax=uncultured bacterium RepID=C5JBH9_9BACT
DsrH family protein; K07237 tRNA 2-thiouridine synthesizing protein B Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
DsrH family protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_17
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11124..11357)
DNA (234bp) protein (78aa)
SirA family protein n=2 Tax=Aquificae RepID=D3DKH8_HYDTT
SirA family protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
sirA3; SirA family protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_18
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11592..12743
DNA (1152bp) protein (384aa)
Transporter component n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2ZRR6_9PROT
YeeE/YedE; K07112 Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
YeeE/YedE
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_19
unknown

Not on your lists

comp(12841..13164)
DNA (324bp) protein (108aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_20
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13174..13737
DNA (564bp) protein (188aa)
2'-5' RNA ligase; K01975 2'-5' RNA ligase [EC:6.5.1.-] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
2'-5' RNA ligase n=1 Tax=Nitrosococcus halophilus (strain Nc4) RepID=D5BZJ3_NITHN
2'-5' RNA ligase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_21
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13794..14420)
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Thioalkalivibrio thiocyanodenitrificans RepID=UPI000375A337
Carboxymuconolactone decarboxylase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
carboxymuconolactone decarboxylase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_22
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14570..15850)
DNA (1281bp) protein (427aa)
Metal dependent phosphohydrolase n=1 Tax=Nitrosococcus watsoni (strain C-113) RepID=D8KAU2_NITWC
metal dependent phosphohydrolase Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
metal dependent phosphohydrolase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_23
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16279..17175)
DNA (897bp) protein (299aa)
phosphoribulokinase (EC:2.7.1.19); K00855 phosphoribulokinase [EC:2.7.1.19] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Phosphoribulokinase n=1 Tax=Thioalkalivibrio sp. (strain HL-EbGR7) RepID=B8GQT4_THISH
phosphoribulokinase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_24
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17492..19246)
DNA (1755bp) protein (585aa)
Sulfate thiol esterase SoxB n=2 Tax=Sulfuricella denitrificans RepID=S6AIY2_9PROT
soxB; sulfate thiol esterase SoxB Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
soxB; sulfate thiol esterase SoxB
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_25
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19541..19639
DNA (99bp) protein (33aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_26
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19657..20526)
DNA (870bp) protein (290aa)
Sulfur oxidation protein SoxA n=1 Tax=uncultured organism RepID=E3T355_9ZZZZ
diheme cytochrome SoxA Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
soxA; sulfur oxidation protein SoxA
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_27
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20581..20901)
DNA (321bp) protein (107aa)
sulfur compound chelating protein SoxZ Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
sulfur compound chelating protein SoxZ id=12497728 bin=THIO_MID species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria
sulfur compound chelating protein SoxZ
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_9199_28
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21045..21197)
DNA (153bp) protein (51aa)
sulfur oxidation protein n=1 Tax=Thiomicrospira arctica RepID=UPI00036705DF
sulfur oxidation protein SoxY-like Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
sulfur oxidation protein SoxY-like
Displaying 28 items

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