ggKbase home page

RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_1
unknown

Not on your lists

2..88
-----------------
DNA (87bp)
protein (29aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_2
RBG_16_Gamma2_64_10_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

85..1119
-----------------
DNA (1035bp)
protein (345aa)
Heme A synthase n=1 Tax=Nitrosomonas sp. (strain Is79A3) RepID=F8GEE1_NITSI
cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15 Tax=RBG_16_Gamma2_64_10_curated
Heme A synthase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_3
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1211..2452
-----------------
DNA (1242bp)
protein (414aa)
NnrS family protein n=1 Tax=Sulfuricella denitrificans skB26 RepID=S6A9K8_9PROT
NnrS family protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
NnrS family protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_4
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2475..2855
-----------------
DNA (381bp)
protein (127aa)
Uncharacterized protein n=1 Tax=Herminiimonas arsenicoxydans RepID=A4G515_HERAR
invasion gene expression up-regulator, SirB Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
invasion gene expression up-regulator, SirB
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_5
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2950..4113
-----------------
DNA (1164bp)
protein (388aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
2-nitropropane dioxygenase NPD n=1 Tax=Acidithiobacillus ferrooxidans (strain ATCC 53993) RepID=B5ENQ5_ACIF5
2-nitropropane dioxygenase
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_6
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4183..4581)
-----------------
DNA (399bp)
protein (133aa)
conjugal transfer protein TraR n=1 Tax=Methylohalobius crimeensis RepID=UPI0003B45427
TraR/DksA family transcriptional regulator Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
TraR/DksA family transcriptional regulator
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_7
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4728..5375
-----------------
DNA (648bp)
protein (216aa)
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00037519FE
cytochrome B561 Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
cytochrome B561
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_8
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5379..5978)
-----------------
DNA (600bp)
protein (200aa)
molybdopterin-guanine dinucleotide biosynthesis protein A; K03752 molybdopterin-guanine dinucleotide biosynthesis protein A [EC:2.7.7.77] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Molybdenum cofactor guanylyltransferase n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DFG9_9GAMM
molybdopterin-guanine dinucleotide biosynthesis protein A
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_9
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5991..7190)
-----------------
DNA (1200bp)
protein (400aa)
Molybdopterin biosynthesis protein MoeA n=1 Tax=Cedecea davisae DSM 4568 RepID=S3IS32_9ENTR
moeA; molybdopterin biosynthesis protein MoeA Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
moeA; molybdopterin biosynthesis protein MoeA
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_10
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7342..7605)
-----------------
DNA (264bp)
protein (88aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Putative uncharacterized protein id=4759988 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=Thioalkalivibrio taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_11
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7753..8466
-----------------
DNA (714bp)
protein (238aa)
Crp/FNR family transcriptional regulator Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Transcriptional Regulator, Crp/Fnr family id=4759989 bin=GWC2_Nitrospirae-rel_56_14 species=Beggiatoa sp. PS genus=Beggiatoa taxon_order=Thiotrichales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
transcriptional regulator, Crp/Fnr family
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_12
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8762..10039)
-----------------
DNA (1278bp)
protein (426aa)
radical SAM protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Radical SAM domain protein id=4759990 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
radical SAM protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_13
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

10909..13848
-----------------
DNA (2940bp)
protein (980aa)
DMSO reductase family type II enzyme, molybdopterin subunit; K00370 nitrate reductase 1, alpha subunit [EC:1.7.99.4] Tax=RBG_16_Nitrospirae_64_22_curated
DMSO reductase family type II enzyme, molybdopterin subunit; K00370 nitrate reductase 1, alpha subunit [EC:1.7.99.4] id=14626670 bin=bin7_NC10_sister species=Thauera selenatis genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DMSO reductase family type II enzyme, molybdopterin subunit
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_14
RBG_16_Nitrospirae_64_22_curated, Nitrospirae, Bacteria

Not on your lists

13904..15118
-----------------
DNA (1215bp)
protein (405aa)
respiratory nitrate reductase 1 beta chain (Nitratereductase subunit A beta) (Quinol-nitrate oxidoreductase subunitbeta) (EC:1.7.99.4)
DMSO reductase family type II enzyme, iron-sulfur subunit Tax=RBG_16_Nitrospirae_64_22_curated
DMSO reductase family type II enzyme, iron-sulfur subunit id=14626671 bin=bin7_NC10_sister species=Halomonas jeotgali genus=Halomonas taxon_order=Oceanospirillales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_15
CSP1_6_Rokubacteria, Rokubacteria, Bacteria

Not on your lists

15129..15812
-----------------
DNA (684bp)
protein (228aa)
DMSO reductase family type II enzyme chaperone id=14626672 bin=bin7_NC10_sister species=Thauera selenatis genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=bin7_NC10_sister organism_group=NC10
DMSO reductase family type II enzyme chaperone Tax=CSP1_6_Rokubacteria
DMSO reductase family type II enzyme chaperone
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_16
Candidatus Magnetoovum chiemensis, Candidatus Magnetoovum, Nitrospirales, Nitrospira, Nitrospirae, Bacteria

Not on your lists

15809..16303
-----------------
DNA (495bp)
protein (165aa)
Cytochrome c {ECO:0000313|EMBL:KJR40028.1}; TaxID=1609970 species="Bacteria; Nitrospirae; Nitrospirales; Nitrospiraceae; Candidatus Magnetoovum.;" source="Candidatus Magnetoovum chiemensis.;"
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_17
RLO_Gammaproteobacteria_52_10, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16318..17139
-----------------
DNA (822bp)
protein (274aa)
putative nitrate reductase subunit gamma (EC:1.7.99.4) Tax=RIFCSPLOWO2_12_FULL_Gammaproteobacteria_52_10_curated
putative nitrate reductase subunit gamma (EC:1.7.99.4)
DMSO reductase family type II enzyme, heme b subunit n=1 Tax=uncultured candidate division OP1 bacterium RepID=H5SMJ3_9BACT
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_18
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17144..17824
-----------------
DNA (681bp)
protein (227aa)
cytochrome c, class I Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Cytochrome c, class I id=4783639 bin=GWC2_Deltaproteobacteria_56_8 species=Nitrobacter hamburgensis genus=Nitrobacter taxon_order=Rhizobiales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_56_8 organism_group=Deltaproteobacteria
cytochrome c, class I
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_19
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17888..18250
-----------------
DNA (363bp)
protein (121aa)
cccA; cytochrome C Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Cytochrome c family protein id=1871585 bin=GWB2_Proteobacteria_55_19 species=Methylacidiphilum fumariolicum genus=Methylacidiphilum taxon_order=Methylacidiphilales taxon_class=unknown phylum=Verrucomicrobia tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
cccA; cytochrome C
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_20
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18298..19299
-----------------
DNA (1002bp)
protein (334aa)
Cyclic pyranopterin monophosphate synthase n=1 Tax=Thioalkalivibrio thiocyanoxidans ARh 4 RepID=G4DFW4_9GAMM
GTP cyclohydrolase subunit MoaA; K03639 molybdenum cofactor biosynthesis protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
molybdenum cofactor biosynthesis protein MoaA
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_21
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19322..19423
-----------------
DNA (102bp)
protein (34aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_22
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19604..19744
-----------------
DNA (141bp)
protein (47aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_23
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19778..19894
-----------------
DNA (117bp)
protein (39aa)
Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_24
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19891..21693
-----------------
DNA (1803bp)
protein (601aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Putative cytochrome bd-type quinol oxidase subunit 1-like protein id=3235181 bin=GWC2_Deltaproteobacteria_42_51 species=endosymbiont of Tevnia jerichonana genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_25
RBG_16_Gallionellales_57_15_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21690..22391
-----------------
DNA (702bp)
protein (234aa)
hypothetical protein Tax=RBG_16_Gallionellales_57_15_curated
Putative uncharacterized protein id=3235185 bin=GWC2_Deltaproteobacteria_42_51 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Deltaproteobacteria_42_51 organism_group=Deltaproteobacteria
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_26
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22396..23178
-----------------
DNA (783bp)
protein (261aa)
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Putative (Diheme) protein id=4501528 bin=GWA2_OP3_52_12 species=endosymbiont of Tevnia jerichonana genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWA2_OP3_52_12 organism_group=OP3 (Omnitrophica) organism_desc=Genome is FULL of scaffolding errors
hypothetical protein
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_27
GWA2_Gallionellales_55_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23171..24742
-----------------
DNA (1572bp)
protein (524aa)
putative cytochrome c Tax=GWA2_Gallionellales_55_18_curated
DMSO reductase family type II enzyme, heme b subunit id=2287506 bin=GWB2_Proteobacteria_55_19 species=endosymbiont of Riftia pachyptila genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
putative cytochrome c
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_28
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24709..24957
-----------------
DNA (249bp)
protein (83aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_29
RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated, Acidobacteria, Bacteria

Not on your lists

25041..27224
-----------------
DNA (2184bp)
protein (728aa)
Universal stress protein id=4759993 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
putative universal stress protein UspA Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_60_22_curated
putative universal stress protein UspA
RIFCSPLOWO2_01_FULL_Gammaprotoebacteria_60_18_rifcsplowo2_01_scaffold_7933_30
R_Gamma2_60_33, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27221..28636
-----------------
DNA (1416bp)
protein (472aa)
protoporphyrinogen oxidase; K00231 oxygen-dependent protoporphyrinogen oxidase [EC:1.3.3.4] Tax=RIFCSPHIGHO2_12_FULL_Gamma2_60_33_curated
Protoporphyrinogen IX oxidase, aerobic id=4759992 bin=GWC2_Nitrospirae-rel_56_14 species=unknown genus=unknown taxon_order=unknown taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWC2_Nitrospirae-rel_56_14 organism_group=Nitrospirae organism_desc=Pretty good; based on recA
protoporphyrinogen oxidase
Displaying items 1-30 of 44 in total

View Taxonomy