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RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227

Search features with annotation key words

Displaying items 1-30 of 150 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_1

Not on your lists

comp(3..650)
-----------------
DNA (648bp)
protein (216aa)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_2
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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comp(774..1580)
-----------------
DNA (807bp)
protein (269aa)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_3

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1804..2685
-----------------
DNA (882bp)
protein (294aa)
Cold-shock DNA-binding domain protein n=1 Tax=Sebaldella termitidis (strain ATCC 33386 / NCTC 11300) RepID=D1ANQ1_SEBTE
cold-shock protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_4

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2854..3192
-----------------
DNA (339bp)
protein (113aa)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_5

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comp(3276..3518)
-----------------
DNA (243bp)
protein (81aa)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_6

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3614..4495
-----------------
DNA (882bp)
protein (294aa)
UPI0001E2C255 related cluster id=5227209 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
DNA protecting protein DprA
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_7
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

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4496..6703
-----------------
DNA (2208bp)
protein (736aa)
DNA topoisomerase 1 n=1 Tax=uncultured bacterium RepID=K1ZHR3_9BACT
topA; DNA topoisomerase I
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_8

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6684..8414
-----------------
DNA (1731bp)
protein (577aa)
relA; GTP pyrophosphokinase (EC:2.7.6.5)
(P)ppGpp synthetase I, SpoT/RelA id=2824562 bin=GWC1_OD1_38_17 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_9
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(8422..9279)
-----------------
DNA (858bp)
protein (286aa)
parB; chromosome partitioning protein ParB; K03497 chromosome partitioning protein, ParB family id=5803595 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
chromosome segregation DNA-binding protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_10
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(9551..10024)
-----------------
DNA (474bp)
protein (158aa)
bcrC; undecaprenyl-diphosphatase BcrC (EC:3.6.1.27)
Bacitracin transport permease protein BcrC id=4530142 bin=GWF2_Firmicute_51_9 species=Brevibacillus laterosporus genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_11

Not on your lists

comp(10034..10888)
-----------------
DNA (855bp)
protein (285aa)
bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD id=4530143 bin=GWF2_Firmicute_51_9 species=Thiovulum sp. ES genus=Thiovulum taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWF2_Firmicute_51_9 organism_group=Firmicute
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_12
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(10885..11766)
-----------------
DNA (882bp)
protein (294aa)
RNA-directed DNA polymerase id=4530225 bin=GWF2_Firmicute_51_9 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWF2_Firmicute_51_9 organism_group=Firmicute
RNA-directed DNA polymerase Reverse transcriptase
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_13

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comp(12339..12551)
-----------------
DNA (213bp)
protein (71aa)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_14

Not on your lists

comp(12634..13182)
-----------------
DNA (549bp)
protein (183aa)
hypothetical protein id=9063 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_15
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

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13368..13763
-----------------
DNA (396bp)
protein (132aa)
Transposase n=5 Tax=unclassified Rhodobacterales RepID=A3JQH3_9RHOB id=9296 bin=ACD15 species=unknown genus=unknown taxon_order=Rhodobacterales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_16
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(14329..15507)
-----------------
DNA (1179bp)
protein (393aa)
glyA; glycine hydroxymethyltransferase (EC:2.1.2.1)
id=5227252 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_17
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists


comp(15504..17864)
-----------------
DNA (2361bp)
protein (787aa)
BSCG--tRNA--synthetase--leucyl
leuS; leucyl-tRNA ligase LeuS (EC:6.1.1.4)
Leucine--tRNA ligase id=4783216 bin=GWC2_OD1_43_27 species=Caldanaerobacter subterraneus genus=Caldanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_18

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comp(17950..18327)
-----------------
DNA (378bp)
protein (126aa)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_19

Not on your lists

comp(18374..19156)
-----------------
DNA (783bp)
protein (261aa)
yabD; TatD-related deoxyribonuclease YabD; K03424 TatD DNase family protein [EC:3.1.21.-] id=15189985 bin=GWB1_SUB10_ACD81 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
hydrolase, TatD family
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_20

Not on your lists


comp(19156..20742)
-----------------
DNA (1587bp)
protein (529aa)
ASCG--Methionyl-tRNA--synthetase
Methionine--tRNA ligase id=2185712 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
methionyl-tRNA synthetase
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_21
GWC2_OD1_43_8, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(20755..21024)
-----------------
DNA (270bp)
protein (90aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A588_9BACT
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_22
R_OD1_Giovannonibacteria_45_23, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(21021..21227)
-----------------
DNA (207bp)
protein (69aa)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_23
R_OD1_48_18, Parcubacteria, Bacteria

Not on your lists

21450..21674
-----------------
DNA (225bp)
protein (75aa)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_24

Not on your lists

comp(21725..22765)
-----------------
DNA (1041bp)
protein (347aa)
hypothetical protein id=5803290 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_25
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(22768..24039)
-----------------
DNA (1272bp)
protein (424aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037E82AE
peptidase M16 domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_26
GWA1_OD1_43_15, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(24061..25809)
-----------------
DNA (1749bp)
protein (583aa)
msv:Mesil_1001 ABC transporter related protein; K06147 ATP-binding cassette, subfamily B, bacterial id=129997 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
multidrug ABC transporter ATPase/permease
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_27

Not on your lists

comp(25877..26068)
-----------------
DNA (192bp)
protein (64aa)
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_28

Not on your lists


comp(26093..27322)
-----------------
DNA (1230bp)
protein (410aa)
ASCG--Glycyl-tRNA--synthetase
glycyl-tRNA synthetase (EC:6.1.1.14)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXQ6_9BACT
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_29

Not on your lists

comp(27331..29205)
-----------------
DNA (1875bp)
protein (625aa)
id=2824162 bin=GWC1_OD1_38_17 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPLOWO2_01_FULL_OD1_43_160_rifcsplowo2_01_scaffold_227_30

Not on your lists

comp(29358..29747)
-----------------
DNA (390bp)
protein (130aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Granulicella mallensis (strain ATCC BAA-1857 / DSM 23137 / MP5ACTX8) RepID=G8NRB4_GRAMM
Glyoxalase/bleomycin resistance protein/dioxygenase
Displaying items 1-30 of 150 in total

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