ggKbase home page

RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_1
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

3..362
-----------------
DNA (360bp)
protein (120aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_2
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(641..1513)
-----------------
DNA (873bp)
protein (291aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_3
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

1650..1880
-----------------
DNA (231bp)
protein (77aa)
Preprotein translocase SecG subunit Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Preprotein translocase SecG subunit id=5803424 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_4
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

1989..2129
-----------------
DNA (141bp)
protein (47aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_5
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

2155..3885
-----------------
DNA (1731bp)
protein (577aa)
putative periplasmic oligopeptide-binding protein of oligopeptide ABC transporter; K02035 peptide/nickel transport system substrate-binding protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Extracellular solute-binding protein family 5 id=4965044 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
putative periplasmic oligopeptide-binding protein of oligopeptide ABC transporter
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_6
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

4025..5908
-----------------
DNA (1884bp)
protein (628aa)
rnjA; ribonuclease J 1 (EC:3.1.-.-) Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RNA-metabolising metallo-beta-lactamase id=4965045 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_7
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5931..7106
-----------------
DNA (1176bp)
protein (392aa)
major facilitator superfamily protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Major facilitator superfamily MFS_1 id=4965047 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
major facilitator superfamily protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_8
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(7064..7216)
-----------------
DNA (153bp)
protein (51aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_9
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(7195..8058)
-----------------
DNA (864bp)
protein (288aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
transporter id=71865 bin=ACD50 species=ACD50 genus=ACD50 taxon_order=ACD50 taxon_class=ACD50 phylum=OP11 tax=ACD50 organism_group=OP11 (Microgenomates) organism_desc=OP11
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_10
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(8084..9031)
-----------------
DNA (948bp)
protein (316aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
hypothetical protein id=14267 bin=ACD18 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=ACD18 organism_group=OD1 (Parcubacteria) organism_desc= OD1
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_11
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(9152..9526)
-----------------
DNA (375bp)
protein (125aa)
transmembrane_regions Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
transmembrane_regions id=5227422 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_12
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(9566..9859)
-----------------
DNA (294bp)
protein (98aa)
id=3309917 Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
id=3309917 bin=GWA1_ZB2_49_26 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_13
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(9895..10548)
-----------------
DNA (654bp)
protein (218aa)
cyclophilin-type peptidylprolyl cis-trans isomerase (EC:5.2.1.8); K01802 peptidylprolyl isomerase [EC:5.2.1.8] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
cyclophilin-type peptidylprolyl cis-trans isomerase (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Synechococcus sp. (strain JA-3-3Ab) RepID=Q2JUG8_SYNJA
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_14
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(10604..11821)
-----------------
DNA (1218bp)
protein (406aa)
aminopeptidase (EC:3.4.11.-); K01269 aminopeptidase [EC:3.4.11.-] Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Thermophilic metalloprotease (M29) superfamily n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JFU9_9BACT
Thermophilic metalloprotease (M29) superfamily
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_15
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

11828..12115
-----------------
DNA (288bp)
protein (96aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_16
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

12137..13369
-----------------
DNA (1233bp)
protein (411aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_17
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

13373..14032
-----------------
DNA (660bp)
protein (220aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_18
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(14246..14608)
-----------------
DNA (363bp)
protein (121aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_19
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(14663..14929)
-----------------
DNA (267bp)
protein (89aa)
transmembrane_regions Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
transmembrane_regions id=5227144 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_20
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(14946..15296)
-----------------
DNA (351bp)
protein (117aa)
seg Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
seg id=5803456 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_21
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(15683..16075)
-----------------
DNA (393bp)
protein (131aa)
seg Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
seg id=5803456 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_22
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(16089..16523)
-----------------
DNA (435bp)
protein (145aa)
seg Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
seg id=5803456 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_23
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(16520..16951)
-----------------
DNA (432bp)
protein (144aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000364D42F
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_24
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(17097..17489)
-----------------
DNA (393bp)
protein (131aa)
Putative uncharacterized protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
Putative uncharacterized protein id=5227148 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_25
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(17509..18816)
-----------------
DNA (1308bp)
protein (436aa)
transmembrane_regions Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
transmembrane_regions id=5803525 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_26
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(18959..19483)
-----------------
DNA (525bp)
protein (175aa)
methylase involved in ubiquinone/menaquinone biosynthesis Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
type 11 methyltransferase id=5803526 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
methylase
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_27
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


comp(19583..22051)
-----------------
DNA (2469bp)
protein (823aa)
gyrA; DNA gyrase subunit A (EC:5.99.1.3) Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
DNA gyrase subunit A (EC:5.99.1.3); K02469 DNA gyrase subunit A [EC:5.99.1.3] id=5803528 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
gyrA; DNA gyrase subunit A (EC:5.99.1.3)
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_28
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(22097..22369)
-----------------
DNA (273bp)
protein (91aa)
Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_29
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(22528..23157)
-----------------
DNA (630bp)
protein (210aa)
Zn-dependent hydrolase of the beta-lactamase fold-like protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
id=5803530 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Zn-dependent hydrolase of the beta-lactamase fold-like protein
RIFCSPLOWO2_01_FULL_OD1_43_83_rifcsplowo2_01_scaffold_5164_30
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


23545..24873
-----------------
DNA (1329bp)
protein (443aa)
rpfA; 30S ribosomal protein S1 Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
RNA binding S1 domain-containing protein; K02945 small subunit ribosomal protein S1 id=5803531 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
30S ribosomal protein S1
Displaying items 1-30 of 40 in total

View Taxonomy