ggKbase home page

RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_1
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(1..1503)
-----------------
DNA (1503bp)
protein (501aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_2
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(1522..3489)
-----------------
DNA (1968bp)
protein (656aa)
id=2192970 Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
id=2192970 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_3
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

3688..5007
-----------------
DNA (1320bp)
protein (440aa)
Cell Wall Hydrolase. Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Peptidase M23B id=2192990 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_4
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

5322..6584
-----------------
DNA (1263bp)
protein (421aa)
Lytic transglycosylase-like, catalytic Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Lytic transglycosylase-like, catalytic id=5801217 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_5
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(6683..7312)
-----------------
DNA (630bp)
protein (210aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_6
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(7416..7601)
-----------------
DNA (186bp)
protein (62aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_7
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(7669..8232)
-----------------
DNA (564bp)
protein (188aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_8
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

8275..9429
-----------------
DNA (1155bp)
protein (385aa)
thiouridylase Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
tRNA-specific 2-thiouridylase MnmA id=2193001 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_9
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

9440..9673
-----------------
DNA (234bp)
protein (78aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_10
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(9678..11066)
-----------------
DNA (1389bp)
protein (463aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_11
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(11077..12624)
-----------------
DNA (1548bp)
protein (516aa)
phosphoglycerate mutase; K15633 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [EC:5.4.2.1] Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
phosphoglycerate mutase (EC:5.4.2.1)
2,3-bisphosphoglycerate-independent phosphoglycerate mutase id=2193003 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_12
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

13292..14824
-----------------
DNA (1533bp)
protein (511aa)
Ribonuclease Y {ECO:0000313|EMBL:KKT81891.1}; TaxID=1619025 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
Ribonuclease Y id=2193004 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
2,3 cyclic-nucleotide 2-phosphodiesterase
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_13
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

15359..15637
-----------------
DNA (279bp)
protein (93aa)
Bacterial nucleoid DNA-binding protein {ECO:0000313|EMBL:KKT81890.1}; TaxID=1619025 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
Histone family protein DNA-binding protein id=2193005 bin=GWE2_OD1_40_11 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWE2_OD1_40_11 organism_group=OD1 (Parcubacteria)
Bacterial nucleoid DNA-binding protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_14
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

15786..17048
-----------------
DNA (1263bp)
protein (421aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_15
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

17131..18423
-----------------
DNA (1293bp)
protein (431aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_16
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(18434..19369)
-----------------
DNA (936bp)
protein (312aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_17
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

19535..21565
-----------------
DNA (2031bp)
protein (677aa)
Uncharacterized protein {ECO:0000313|EMBL:KKT81886.1}; TaxID=1619025 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_18
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

21549..21890
-----------------
DNA (342bp)
protein (114aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_19
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

21893..22939
-----------------
DNA (1047bp)
protein (349aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_20
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

23549..23773
-----------------
DNA (225bp)
protein (75aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_21
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

23863..24237
-----------------
DNA (375bp)
protein (125aa)
Putative uncharacterized protein n=1 Tax=Desulfosporosinus youngiae DSM 17734 RepID=H5Y4I6_9FIRM
hypothetical protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_22
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

24237..24623
-----------------
DNA (387bp)
protein (129aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_23
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(24968..25171)
-----------------
DNA (204bp)
protein (68aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_24
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

25311..25484
-----------------
DNA (174bp)
protein (58aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_25
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

25585..26334
-----------------
DNA (750bp)
protein (250aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_26
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

26343..26888
-----------------
DNA (546bp)
protein (182aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_27
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

26957..27295
-----------------
DNA (339bp)
protein (113aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YEI0_9BACT
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_28
GWA2_OD1_44_9, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(27323..28351)
-----------------
DNA (1029bp)
protein (343aa)
NAD-dependent isocitrate dehydrogenase (EC:1.1.1.41)
isocitrate dehydrogenase n=1 Tax=Orenia marismortui RepID=UPI00036FD775
Isocitrate dehydrogenase, NAD-dependent {ECO:0000313|EMBL:KKT81875.1}; TaxID=1619025 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Yanofskybacteria) bacterium GW2011_GWA2_44_9.;"
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_29
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(28613..30841)
-----------------
DNA (2229bp)
protein (743aa)
multimodular transpeptidase-transglycosylase Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Penicillin-binding protein 1 id=2212991 bin=GWB2_Nitrospirae_rel_47_37 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
multimodular transpeptidase-transglycosylase
RIFCSPLOWO2_01_FULL_OD1_44_22_rifcsplowo2_01_scaffold_454_30
R_OD1_Yanofskybacteria_44_24, Yanofskybacteria, Parcubacteria, Bacteria

Not on your lists

comp(30953..31336)
-----------------
DNA (384bp)
protein (128aa)
Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_44_24_curated
Displaying items 1-30 of 59 in total

View Taxonomy