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RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379

Search features with annotation key words

Displaying items 1-30 of 80 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_1
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(3..182)
-----------------
DNA (180bp)
protein (60aa)
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_2
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

1355..1888
-----------------
DNA (534bp)
protein (178aa)
Probable thymidylate kinase n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RIB9_METP4
thymidylate kinase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_3
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

1885..2955
-----------------
DNA (1071bp)
protein (357aa)
Putative coenzyme PQQ synthesis protein n=1 Tax=Amycolatopsis orientalis HCCB10007 RepID=R4T3T8_AMYOR
putative coenzyme PQQ synthesis protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_4
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

3024..3767
-----------------
DNA (744bp)
protein (248aa)
Endonuclease/exonuclease/phosphatase n=1 Tax=Methanoplanus petrolearius (strain DSM 11571 / OCM 486 / SEBR 4847) RepID=E1RIB8_METP4
endonuclease/exonuclease/phosphatase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_5
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

3764..4363
-----------------
DNA (600bp)
protein (200aa)
Uncharacterized protein id=3239451 bin=GWB1_KAZAN_52_7 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWB1_KAZAN_52_7 organism_group=Kazan
thiamine-triphosphatase-like
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_6
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

4390..4860
-----------------
DNA (471bp)
protein (157aa)
Zn-finger containing NTP pyrophosphohydrolase n=1 Tax=Saccharomonospora marina XMU15 RepID=H5X2D1_9PSEU
putative nudix hydrolase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_7
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(5890..6195)
-----------------
DNA (306bp)
protein (102aa)
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_8
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(6406..8328)
-----------------
DNA (1923bp)
protein (641aa)
Glycosidase PH1107-related protein n=1 Tax=Methanothermus fervidus (strain ATCC 43054 / DSM 2088 / JCM 10308 / V24 S) RepID=E3GYX5_METFV
glycosidase ph1107-related protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_9
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(8330..9460)
-----------------
DNA (1131bp)
protein (377aa)
glycosidase ph1107-related protein id=5803228 bin=OD1_GWC2_34_28 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
glycosidase ph1107-related protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_10
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(10014..10463)
-----------------
DNA (450bp)
protein (150aa)
id=2439715 bin=GWA1_Alphaproteobacteria_45_9 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA1_Alphaproteobacteria_45_9 organism_group=Alphaproteobacteria organism_desc=Good marker genes; small
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_11
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(10450..10971)
-----------------
DNA (522bp)
protein (174aa)
Uncharacterized Nudix hydrolase all7351 n=2 Tax=Nostoc sp. (strain PCC 7120 / UTEX 2576) RepID=Y7351_NOSS1
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_12
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

11001..11234
-----------------
DNA (234bp)
protein (78aa)
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_13
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(11159..11665)
-----------------
DNA (507bp)
protein (169aa)
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_14
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(11754..12086)
-----------------
DNA (333bp)
protein (111aa)
Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HW23_9BACT id=42227 bin=ACD37 species=Algoriphagus machipongonensis genus=Algoriphagus taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=ACD37 organism_group=OP11 (Microgenomates) organism_desc=OP11
excinuclease abc c subunit domain protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_15
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(12147..14846)
-----------------
DNA (2700bp)
protein (900aa)
ATP-dependent chaperone ClpB id=2648842 bin=GWC1_OD1_38_17 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
clpB; chaperone ClpB
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_16
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(15081..16346)
-----------------
DNA (1266bp)
protein (422aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI0003710990
protease Do
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_17
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(16625..16849)
-----------------
DNA (225bp)
protein (75aa)
ferredoxin n=1 Tax=Parcubacteria bacterium SCGC AAA011-N16 RepID=UPI0003B30A29
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_18
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(17543..17995)
-----------------
DNA (453bp)
protein (151aa)
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_19
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(17992..18447)
-----------------
DNA (456bp)
protein (152aa)
Elongation factor Ts id=2074380 bin=GWE2_CPR3_35_7 species=ACD37 genus=ACD37 taxon_order=ACD37 taxon_class=ACD37 phylum=OP11 tax=GWE2_CPR3_35_7 organism_group=CPR3 organism_desc=Good
translation elongation factor Ts
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_20
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists


comp(18538..19344)
-----------------
DNA (807bp)
protein (269aa)
BSCG--ribosomal--protein--S2
30S ribosomal protein S2 n=1 Tax=Planctomyces brasiliensis (strain ATCC 49424 / DSM 5305 / JCM 21570 / NBRC 103401 / IFAM 1448) RepID=F0SJS7_PLABD
30S ribosomal protein S2P
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_21
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(19352..19540)
-----------------
DNA (189bp)
protein (63aa)
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_22
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists


19604..19867
-----------------
DNA (264bp)
protein (88aa)
50S ribosomal protein L31; K02909 large subunit ribosomal protein L31 id=96589 bin=ACD63 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=ACD63 organism_group=OD1 (Parcubacteria) organism_desc=OD1
50S ribosomal protein L31
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_23
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

19864..20613
-----------------
DNA (750bp)
protein (250aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI00037D6332
prfA; peptide chain release factor 1
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_24
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(20662..21984)
-----------------
DNA (1323bp)
protein (441aa)
Uncharacterized protein n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PX56_9BACT
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_25
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists


comp(21984..22682)
-----------------
DNA (699bp)
protein (233aa)
hypothetical protein n=1 Tax=Candidatus Paceibacter normanii SCGC AAA255-P19 RepID=UPI00036E2395
ctc; 50S ribosomal protein L25
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_26
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(22750..23727)
-----------------
DNA (978bp)
protein (326aa)
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein id=3506657 bin=GWC1_OD1_38_17 species=Thermosinus carboxydivorans genus=Thermosinus taxon_order=Selenomonadales taxon_class=Negativicutes phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
D-isomer specific 2-hydroxyacid dehydrogenase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_27
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(23800..24675)
-----------------
DNA (876bp)
protein (292aa)
Tagatose-bisphosphate aldolase id=4790072 bin=GWC2_OD1_43_27 species=GWE2_OD1_40_11 genus=GWE2_OD1_40_11 taxon_order=GWE2_OD1_40_11 taxon_class=GWE2_OD1_40_11 phylum=OD1 tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
Tagatose-bisphosphate aldolase
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_28
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

24819..25805
-----------------
DNA (987bp)
protein (329aa)
carbohydrate kinase PfkB; K00852 ribokinase [EC:2.7.1.15] id=5803344 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
putative Ribokinase (EC:2.7.1.15)
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_29
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(25979..26170)
-----------------
DNA (192bp)
protein (64aa)
RIFCSPLOWO2_01_FULL_OD1_44_230_rifcsplowo2_01_scaffold_379_30
R_RIF_OD1_12_44_230, RIF-OD1-12, Parcubacteria, Bacteria

Not on your lists

comp(26283..27296)
-----------------
DNA (1014bp)
protein (338aa)
Putative transketolase C-terminal section (TK) id=4790069 bin=GWC2_OD1_43_27 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
transketolase
Displaying items 1-30 of 80 in total

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