ggKbase home page

RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs functional annotations notes
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_1
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(2..157)
-----------------
DNA (156bp)
protein (52aa)
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_2
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

208..375
-----------------
DNA (168bp)
protein (56aa)
Transcriptional regulator, XRE family id=3506444 bin=GWC1_OD1_38_17 species=ACD76 genus=ACD76 taxon_order=ACD76 taxon_class=ACD76 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
regulatory protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_3

Not on your lists

381..1289
-----------------
DNA (909bp)
protein (303aa)
hypothetical protein n=1 Tax=filamentous cyanobacterium ESFC-1 RepID=UPI0003742B73
restriction endonuclease
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_4

Not on your lists

1344..2312
-----------------
DNA (969bp)
protein (323aa)
Putative uncharacterized protein id=4765203 bin=GWC2_CP_Nitrospirae-rel_42_7 species=Acetohalobium arabaticum genus=Acetohalobium taxon_order=Halanaerobiales taxon_class=Clostridia phylum=Firmicutes tax=GWC2_CP_Nitrospirae-rel_42_7 organism_group=Nitrospirae
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_5
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

2272..2610
-----------------
DNA (339bp)
protein (113aa)
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_6
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

2567..2977
-----------------
DNA (411bp)
protein (137aa)
Ribonuclease VapC n=1 Tax=Methylophaga lonarensis MPL RepID=M7P3K6_9GAMM
PIN domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_7
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

2928..3155
-----------------
DNA (228bp)
protein (76aa)
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_8

Not on your lists

comp(3358..3996)
-----------------
DNA (639bp)
protein (213aa)
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_9
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(4081..4368)
-----------------
DNA (288bp)
protein (96aa)
DNA-binding protein HupA id=3506549 bin=GWC1_OD1_38_17 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
histone-like DNA-binding protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_10

Not on your lists

comp(4383..5216)
-----------------
DNA (834bp)
protein (278aa)
Metallophosphoesterase, MG_246/BB_0505 family id=3506548 bin=GWC1_OD1_38_17 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
ymdB; hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_11

Not on your lists

comp(5243..5476)
-----------------
DNA (234bp)
protein (78aa)
Uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UUT0_9AQUI
putative periplasmic or secreted lipoprotein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_12
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(5469..5723)
-----------------
DNA (255bp)
protein (85aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2BX32_9BACT
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_13

Not on your lists

5824..6276
-----------------
DNA (453bp)
protein (151aa)
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_14

Not on your lists

6405..6683
-----------------
DNA (279bp)
protein (93aa)
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_15
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

6780..8030
-----------------
DNA (1251bp)
protein (417aa)
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_16

Not on your lists

comp(8640..9107)
-----------------
DNA (468bp)
protein (156aa)
bcrC; undecaprenyl-diphosphatase BcrC (EC:3.6.1.27)
Bacitracin transport permease protein BcrC id=4530142 bin=GWF2_Firmicute_51_9 species=Brevibacillus laterosporus genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWF2_Firmicute_51_9 organism_group=Firmicute
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_17

Not on your lists

9190..9621
-----------------
DNA (432bp)
protein (144aa)
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_18

Not on your lists

comp(9653..10492)
-----------------
DNA (840bp)
protein (280aa)
folD; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase (EC:1.5.1.5 3.5.4.9)
Bifunctional protein FolD id=4530143 bin=GWF2_Firmicute_51_9 species=Thiovulum sp. ES genus=Thiovulum taxon_order=Campylobacterales taxon_class=Epsilonproteobacteria phylum=Proteobacteria tax=GWF2_Firmicute_51_9 organism_group=Firmicute
RIFCSPLOWO2_01_FULL_OD1_45_140_rifcsplowo2_01_scaffold_14424_19
R_OD1_Giovannonibacteria_45_140, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(10479..11189)
-----------------
DNA (711bp)
protein (237aa)
glyA; serine hydroxymethyltransferase (EC:2.1.2.1)
id=5227252 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Displaying 19 items

View Taxonomy