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RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_1
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(731..1012)
DNA (282bp) protein (94aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_2
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(1150..2121)
DNA (972bp) protein (324aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_3
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

2342..2734
DNA (393bp) protein (131aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_4
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2805..3665)
DNA (861bp) protein (287aa)
comEC; DNA internalization competence protein; K02238 competence protein ComEC Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
DNA internalization-like competence protein ComEC/Rec2; K02238 competence protein ComEC id=5803006 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
competence protein ComEC
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_5
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

3684..4280
DNA (597bp) protein (199aa)
manganese/iron superoxide dismutase-like protein; K04564 superoxide dismutase, Fe-Mn family [EC:1.15.1.1] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Superoxide dismutase, iron/manganese-containing n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PZU5_9BACT
manganese/iron superoxide dismutase-like protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_6
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(4231..5712)
DNA (1482bp) protein (494aa)
ComEC/Rec2-like protein; K02238 competence protein ComEC Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
DNA internalization-related competence protein ComEC/Rec2; K02238 competence protein ComEC id=5803109 bin=OD1_GWC2_34_28 species=ACD12 genus=ACD12 taxon_order=ACD12 taxon_class=ACD12 phylum=OP11 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
ComEC/Rec2-like protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_7
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(5702..6226)
DNA (525bp) protein (175aa)
Ribonuclease H (EC:3.1.26.4) Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Ribonuclease H (EC:3.1.26.4)
Ribonuclease H n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XGY3_9CHRO
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_8
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(6230..6433)
DNA (204bp) protein (68aa)
Marine sediment metagenome DNA, contig: S06H3_S04575 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_9
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(6426..6647)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A6H6_9BACT
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_10
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(6687..8387)
DNA (1701bp) protein (567aa)
single-stranded-DNA-specific exonuclease RecJ; K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
single-stranded-DNA-specific exonuclease recJ (EC:3.1.-.-); K07462 single-stranded-DNA-specific exonuclease [EC:3.1.-.-] id=5803114 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
single-stranded-DNA-specific exonuclease RecJ
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_11
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

8430..8846
DNA (417bp) protein (139aa)
HIT family hydrolase n=1 Tax=Desulfovibrio longus RepID=UPI0003B51C60
putative histidine triad (HIT) protein; K02503 Hit-like protein involved in cell-cycle regulation Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
protein hit
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_12
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(8838..9908)
DNA (1071bp) protein (357aa)
phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
pgk; phosphoglycerate kinase (EC:2.7.2.3); K00927 phosphoglycerate kinase [EC:2.7.2.3] id=5803116 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
pgk; phosphoglycerate kinase (EC:2.7.2.3)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_13
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(9898..10662)
DNA (765bp) protein (255aa)
triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
triosephosphate isomerase (EC:5.3.1.1); K01803 triosephosphate isomerase (TIM) [EC:5.3.1.1] id=5803118 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
triosephosphate isomerase (EC:5.3.1.1)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_14
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(10673..11923)
DNA (1251bp) protein (417aa)
S-layer domain protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
S-layer domain protein id=2824651 bin=GWC1_OD1_38_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_15
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(11955..12455)
DNA (501bp) protein (167aa)
seg Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
seg id=5803120 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_16
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(12460..12957)
DNA (498bp) protein (166aa)
transmembrane_regions Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
transmembrane_regions id=5227506 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_17
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(12965..13945)
DNA (981bp) protein (327aa)
RNA-directed DNA polymerase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RNA-directed DNA polymerase id=4530225 bin=GWF2_Firmicute_51_9 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWF2_Firmicute_51_9 organism_group=Firmicute
RNA-directed DNA polymerase Reverse transcriptase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_18
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

13996..14349
DNA (354bp) protein (118aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI0003722EA1
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_19
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(14729..15232)
DNA (504bp) protein (168aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_20
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(15369..15815)
DNA (447bp) protein (149aa)
Uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Uncharacterized protein id=3787217 bin=GWB1_Berkelbacteria_38_5 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWB1_Berkelbacteria_38_5 organism_group=ACD58 (Berkelbacteria)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_21
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(15812..16882)
DNA (1071bp) protein (357aa)
type II secretion system F domain-containing protein; K02653 type IV pilus assembly protein PilC Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
pilus assembly protein PilC; K02653 type IV pilus assembly protein PilC id=5803123 bin=OD1_GWC2_34_28 species=ACD9 genus=ACD9 taxon_order=ACD9 taxon_class=ACD9 phylum=OD1-i tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_22
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(17197..17472)
DNA (276bp) protein (92aa)
Addiction module antitoxin, RelB/DinJ family Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Addiction module antitoxin, RelB/DinJ family id=3336325 bin=GWA2_OP3_53_43 species=Mobiluncus mulieris genus=Mobiluncus taxon_order=Actinomycetales taxon_class=Actinobacteria phylum=Actinobacteria tax=GWA2_OP3_53_43 organism_group=OP3 (Omnitrophica) organism_desc=Was designated as curated version. Not curated. rp block places as OP3
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_23
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(17754..19496)
DNA (1743bp) protein (581aa)
Type II secretion system protein E Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Tfp pilus assembly protein PilB; K02652 type IV pilus assembly protein PilB id=5803124 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
secretion system protein E
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_12709_24
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(19502..21730)
DNA (2229bp) protein (743aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Displaying 24 items

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