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RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636

Search features with annotation key words

Displaying items 1-30 of 82 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_1
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

442..1485
DNA (1044bp) protein (348aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_2
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

1699..2073
DNA (375bp) protein (125aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_3
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2113..2334)
DNA (222bp) protein (74aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2A3G7_9BACT
hypothetical protein; K07339 hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_4
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2327..2572)
DNA (246bp) protein (82aa)
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Hypothetical conserved protein id=4009637 bin=GWC2_Methylomirabilis_70_24 species=uncultured candidate division OP1 bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC2_Methylomirabilis_70_24 organism_group=NC10 organism_desc=Good
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_5
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2600..3622)
DNA (1023bp) protein (341aa)
ruvB; RuvB (EC:3.6.4.12) Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Holliday junction DNA helicase RuvB; K03551 holliday junction DNA helicase RuvB [EC:3.6.4.12] id=5803214 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Holliday junction DNA helicase RuvB
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_6
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(4077..5750)
DNA (1674bp) protein (558aa)
type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
pilB1; type IV-A pilus assembly ATPase PilB; K02652 type IV pilus assembly protein PilB id=5803215 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type IV-A pilus assembly ATPase PilB
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_7
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

5917..6702
DNA (786bp) protein (262aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_8
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

6791..7258
DNA (468bp) protein (156aa)
hypothetical protein; K06925 UPF0079 ATP-binding protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Putative uncharacterized protein id=2966082 bin=GWA1_ZB2_49_26 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
Nucleotide-binding protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_9
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(7427..7993)
DNA (567bp) protein (189aa)
PaaX family transcriptional regulator; K02616 phenylacetic acid degradation operon negative regulatory protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
ORF13 id=3305467 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
PaaX family transcrtiptional regulator
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_10
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

8312..9124
DNA (813bp) protein (271aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_11
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

9184..11697
DNA (2514bp) protein (838aa)
DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
polA; DNA polymerase I (EC:2.7.7.7); K02335 DNA polymerase I [EC:2.7.7.7] id=5803218 bin=OD1_GWC2_34_28 species=uncultured bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA polymerase I
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_12
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

11756..12169
DNA (414bp) protein (138aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00035C3635
hypothetical protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_13
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

12269..12925
DNA (657bp) protein (219aa)
id=5803220 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
id=5803220 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_14
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(13036..13440)
DNA (405bp) protein (135aa)
DoxX family protein; K15977 putative oxidoreductase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Uncharacterised protein family YphA id=5803221 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DoxX family protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_15
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

13476..14390
DNA (915bp) protein (305aa)
seg Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
seg id=5803223 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_16
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(14223..14687)
DNA (465bp) protein (155aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_17
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

14691..15323
DNA (633bp) protein (211aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_18
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(15555..16004)
DNA (450bp) protein (150aa)
tRNA/rRNA methyltransferase (spou) Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
tRNA/rRNA methyltransferase SpoU id=5803222 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
tRNA/rRNA methyltransferase (spou)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_19
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

16005..16934
DNA (930bp) protein (310aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_20
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(16935..17498)
DNA (564bp) protein (188aa)
Holliday junction DNA helicase RuvA; K03550 holliday junction DNA helicase RuvA [EC:3.6.4.12] id=5803226 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Holliday junction DNA helicase subunit RuvA Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Holliday junction DNA helicase subunit RuvA
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_21
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists


17559..17822
DNA (264bp) protein (88aa)
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
30S ribosomal protein S20 id=3305463 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
rpsT; 30S ribosomal protein S20
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_22
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(17939..18394)
DNA (456bp) protein (152aa)
Putative uncharacterized protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Putative uncharacterized protein id=3305474 bin=GWA2_CPR4_42_17 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=GWA2_CPR4_42_17 organism_group=CPR4 organism_desc=from megabin
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_23
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(18409..18834)
DNA (426bp) protein (142aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_24
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(18831..19034)
DNA (204bp) protein (68aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_25
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(19087..19293)
DNA (207bp) protein (69aa)
id=1816710 Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
id=1816710 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_26
GWA2_OD1_47_12, Parcubacteria, Bacteria

Not on your lists

19402..19782
DNA (381bp) protein (127aa)
Putative Holliday junction resolvase Tax=GWA2_OD1_47_12
PAS/PAC sensor signal transduction histidine kinase id=1779307 bin=GWE2_Spirochaete_31_10 species=Paludibacter propionicigenes genus=Paludibacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWE2_Spirochaete_31_10 organism_group=Spirochaetes organism_desc=Good +
Holliday junction resolvase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_27
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

19936..20715
DNA (780bp) protein (260aa)
Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_28
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

21456..22322
DNA (867bp) protein (289aa)
RNA-directed DNA polymerase Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Retron-type reverse transcriptase id=3736736 bin=GWC2_OD1_43_27 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
RNA-directed DNA polymerase
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_29
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

22297..22935
DNA (639bp) protein (213aa)
hypothetical protein; K03975 membrane-associated protein Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
hypothetical protein; K03975 membrane-associated protein id=5227482 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_48_100_rifcsplowo2_01_scaffold_2636_30
R_RIF_OD1_11_47_18, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

22929..23909
DNA (981bp) protein (327aa)
Type IV pilus assembly protein PilM Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_47_18_curated
Type IV pilus assembly protein PilM id=5227483 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
Displaying items 1-30 of 82 in total

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