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RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612

Search features with annotation key words

Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_1
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(16..2037)
DNA (2022bp) protein (674aa)
DNA ligase; K01972 DNA ligase (NAD+) [EC:6.5.1.2] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
DNA ligase; K01972 DNA ligase (NAD+) [EC:6.5.1.2] id=5803071 bin=OD1_GWC2_34_28 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
DNA ligase
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_2
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2155..2721)
DNA (567bp) protein (189aa)
seg Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
seg id=5803072 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_3
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(2718..3320)
DNA (603bp) protein (201aa)
seg Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
seg id=5803073 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_4
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(3343..4020)
DNA (678bp) protein (226aa)
seg Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
seg id=5803074 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_5
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(4025..4789)
DNA (765bp) protein (255aa)
Pili subunits Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Pili subunits id=5803075 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_6
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(4786..5652)
DNA (867bp) protein (289aa)
peptidase a24a, prepilin type iv peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase [EC:3.4.23.43 2.1.1.-] Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Prepilin peptidase-1 n=1 Tax=candidate division OD1 bacterium RAAC4_OD1_1 RepID=V7PXW4_9BACT
peptidase a24a, prepilin type iv peptidase
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_7
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(5723..6241)
DNA (519bp) protein (173aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI00037A71CB
hypothetical protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
prepilin-type N-terminal cleavage/methylation domain-containing protein
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_8
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(6199..6489)
DNA (291bp) protein (97aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_9
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(6561..7766)
DNA (1206bp) protein (402aa)
Tfp pilus biogenesis protein PilC; K02653 type IV pilus assembly protein PilC Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Type II secretion system F domain; K02653 type IV pilus assembly protein PilC id=5803078 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
Tfp pilus biogenesis protein PilC
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_10
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(7850..8908)
DNA (1059bp) protein (353aa)
pilT; twitching motility protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
twitching motility protein; K02669 twitching motility protein PilT id=5803079 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
pilT; twitching motility protein
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_11
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(9080..9484)
DNA (405bp) protein (135aa)
phosphate regulon transcriptional regulatory protein PhoB; K07657 two-component system, OmpR family, phosphate regulon response regulator PhoB Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Response regulator receiver domain protein id=5227299 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
phosphate regulon transcriptional regulatory protein PhoB
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_12
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(9597..11306)
DNA (1710bp) protein (570aa)
putative type II secretion system protein E Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
general secretion pathway protein E id=5803081 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
type II secretion system protein E
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_13
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(11402..11830)
DNA (429bp) protein (143aa)
seg Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
seg id=5803082 bin=OD1_GWC2_34_28 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_14
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(11883..12581)
DNA (699bp) protein (233aa)
no description Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
no description id=5803083 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_15
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(12535..13188)
DNA (654bp) protein (218aa)
transmembrane_regions Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
transmembrane_regions id=5227303 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_16
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(13415..14620)
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA011-A09 RepID=UPI000365F3C2
Tfp pilus assembly protein, ATPase PilM; K02662 type IV pilus assembly protein PilM Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Tfp pilus assembly protein, ATPase PilM
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_17
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

14707..15354
DNA (648bp) protein (216aa)
competence protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
competence protein F; K02242 competence protein ComFC id=5803087 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
competence protein
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_18
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(15673..16509)
DNA (837bp) protein (279aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium 2303 RepID=B8R913_9BACT
hypothetical protein Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_50_130_rifcsplowo2_01_scaffold_13612_19
R_RIF_OD1_11_50_13, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(16632..16844)
DNA (213bp) protein (71aa)
Tax=RIFCSPLOWO2_02_RIF_OD1_11_50_13_curated
Displaying 19 items

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