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RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143

Search features with annotation key words

Displaying items 1-30 of 56 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_1
RLO_PER_ii_53_10, PER-ii, Bacteria

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comp(45..323)
DNA (279bp) protein (93aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_53_10_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_2
Hordeum vulgare, Hordeum, Poales, commelinids, Streptophyta, Viridiplantae

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comp(400..3060)
DNA (2661bp) protein (887aa)
Predicted protein n=1 Tax=Hordeum vulgare var. distichum RepID=F2CTJ3_HORVD
Predicted protein {ECO:0000313|EMBL:BAJ86164.1}; TaxID=112509 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP
bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like protein
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_3
unknown

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comp(3026..3454)
DNA (429bp) protein (143aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_4
unknown

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comp(3477..5084)
DNA (1608bp) protein (536aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_5
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(5152..7221)
DNA (2070bp) protein (690aa)
recG; putative ATP-dependent DNA helicase (EC:3.6.4.12) Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
recG; ATP-dependent DNA helicase; K03655 ATP-dependent DNA helicase RecG [EC:3.6.4.12] id=5090445 bin=GWC2_PER_33_13 species=PER_GWC2_33_13 genus=PER_GWC2_33_13 taxon_order=PER_GWC2_33_13 taxon_class=PER_GWC2_33_13 phylum=PER tax=GWC2_PER_33_13 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
recG; putative ATP-dependent DNA helicase (EC:3.6.4.12)
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_6
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

comp(7200..8018)
DNA (819bp) protein (273aa)
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase (EC:2.5.1.75); K00791 tRNA dimethylallyltransferase [EC:2.5.1.75] id=99332 bin=ACD66 species=ACD66 genus=ACD66 taxon_order=ACD66 taxon_class=ACD66 phylum=OD1 tax=ACD66 organism_group=OD1 (Parcubacteria) organism_desc=OD1
miaA; tRNA delta(2)-isopentenylpyrophosphate transferase
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_7
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

8056..8652
DNA (597bp) protein (199aa)
ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92); K01358 ATP-dependent Clp protease, protease subunit [EC:3.4.21.92] id=5095705 bin=PER_GWF2_38_29 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWF2_38_29 organism_group=PER (Peregrinibacteria)
ATP-dependent Clp protease proteolytic subunit (EC:3.4.21.92)
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_8
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

8660..9811
DNA (1152bp) protein (384aa)
queuine tRNA-ribosyltransferase (EC:2.4.2.29); K00773 queuine tRNA-ribosyltransferase [EC:2.4.2.29] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
queuine tRNA-ribosyltransferase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SVB1_PLAL2
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_9
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(9823..10146)
DNA (324bp) protein (108aa)
50S ribosomal protein L21; K02888 large subunit ribosomal protein L21 Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
50S ribosomal protein L21
50S ribosomal protein L21 id=2218058 bin=GWB2_Bacteroidetes_32_14 species=Pedobacter saltans genus=Pedobacter taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWB2_Bacteroidetes_32_14 organism_group=Bacteroidetes organism_desc=a47
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_10
RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated, Falkowbacteria, Parcubacteria, Bacteria

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comp(10463..11749)
DNA (1287bp) protein (429aa)
hypothetical protein BoklC_20579 Tax=RIFOXYA2_FULL_OD1_Falkowbacteria_38_12_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_11
CG_PER_01, Peregrinibacteria, Bacteria

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12044..12265
DNA (222bp) protein (74aa)
XRE family transcriptional regulator Tax=CG_PER_01
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_12
Methanobacterium lacus, Methanobacterium, Methanobacteriales, Methanobacteria, Euryarchaeota, Archaea

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12325..15408
DNA (3084bp) protein (1028aa)
Type II site-specific deoxyribonuclease {ECO:0000313|EMBL:ADZ10368.1}; EC=3.1.21.4 {ECO:0000313|EMBL:ADZ10368.1};; TaxID=877455 species="Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Me
type ii site-specific deoxyribonuclease (EC:3.1.21.4)
Type II site-specific deoxyribonuclease n=1 Tax=Methanobacterium sp. (strain AL-21) RepID=F0TCA1_METSL
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_13
unknown

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15542..15754
DNA (213bp) protein (71aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_14
R_OD1_Nomurabacteria_40_15, Nomurabacteria, Parcubacteria, Bacteria

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16018..17253
DNA (1236bp) protein (412aa)
Putative uncharacterized protein n=1 Tax=Frateuria aurantia (strain ATCC 33424 / DSM 6220 / NBRC 3245 / NCIMB 13370) RepID=H8L6X3_FRAAD id=5103072 bin=GW2011_AR20_complete species=GW2011_AR20 genus=GW2011_AR20 taxon_order=GW2011_AR20 taxon_class=GW2011_AR20 phylum=Archaeon tax=GW2011_AR20_complete organism_group=Woesearchaeota organism_desc=GWA2_A_30_20A_AR20 Complete genome
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_OD1_Nomurabacteria_40_15_curated
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_15
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

17201..17989
DNA (789bp) protein (263aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
Putative uncharacterized protein id=3012698 bin=GWC1_OD1_38_17 species=uncultured marine bacterium 580 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_16

Not on your lists

18012..18257
DNA (246bp) protein (82aa)
Uncharacterized protein {ECO:0000313|EMBL:EKD94579.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_17
RIFOXYD2_FULL_PER_ii_58_15_curated, PER-ii, Bacteria

Not on your lists

comp(18252..18998)
DNA (747bp) protein (249aa)
recombinase
recombinase Tax=RIFOXYD2_FULL_PER_ii_58_15_curated
Recombinase id=2896400 bin=GWA1_Kazan_50_15 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWA1_Kazan_50_15 organism_group=Kazan organism_desc=Probably Kazan: candidate for curation
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_18
unknown

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19233..19538
DNA (306bp) protein (102aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_19
RIFOXYD2_FULL_PER_ii_58_15_curated, PER-ii, Bacteria

Not on your lists

comp(19752..21272)
DNA (1521bp) protein (507aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2B524_9BACT
Phage protein Tax=RIFOXYD2_FULL_PER_ii_58_15_curated
phage protein
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_20
RIFOXYD2_FULL_PER_ii_58_15_curated, PER-ii, Bacteria

Not on your lists

comp(21232..21696)
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=candidate division TM7 genomosp. GTL1 RepID=A5KSN3_9BACT id=5086643 bin=GWF1_OP11_31_35_complete species=candidate division TM7 genomosp. GTL1 genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWF1_OP11_31_35_complete organism_group=OP11 (Microgenomates) organism_desc=Complete genome (was OP11_1)
Putative uncharacterized protein Tax=RIFOXYD2_FULL_PER_ii_58_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_21
RIFOXYD2_FULL_PER_ii_58_15_curated, PER-ii, Bacteria

Not on your lists

comp(21693..22466)
DNA (774bp) protein (258aa)
dcm2; DNA (cytosine-5-)-methyltransferase (EC:2.1.1.37) Tax=RIFOXYD2_FULL_PER_ii_58_15_curated
dcm2; DNA (cytosine-5-)-methyltransferase (EC:2.1.1.37)
Putative adenine methyltransferase id=4219981 bin=GWF2_Bacteroidetes_41_61 species=Lactobacillus johnsonii prophage Lj771 genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_22
RIFOXYD2_FULL_PER_ii_58_15_curated, PER-ii, Bacteria

Not on your lists

comp(22463..23758)
DNA (1296bp) protein (432aa)
DNA methylase (EC:2.1.1.37) Tax=RIFOXYD2_FULL_PER_ii_58_15_curated
DNA methylase id=4219983 bin=GWF2_Bacteroidetes_41_61 species=WS6_GWF1_36_7 genus=WS6_GWF1_36_7 taxon_order=WS6_GWF1_36_7 taxon_class=WS6_GWF1_36_7 phylum=WS6 tax=GWF2_Bacteroidetes_41_61 organism_group=Bacteroidetes organism_desc=a118
DNA methylase N-4
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_23
unknown

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23843..24916
DNA (1074bp) protein (358aa)

This feature has no annotations

RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_24
R_PER_ii_51_35, PER-ii, Bacteria

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24981..25670
DNA (690bp) protein (230aa)
Uncharacterized protein Tax=RIFCSPHIGHO2_01_FULL_PER_ii_51_35_curated
hypothetical protein id=9360 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_25
R_PER_ii_51_35, PER-ii, Bacteria

Not on your lists

25667..26779
DNA (1113bp) protein (371aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K1YX84_9BACT
seg 77..88 Tax=RIFCSPHIGHO2_01_FULL_PER_ii_51_35_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_26
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

27182..27370
DNA (189bp) protein (63aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_27
RLO_PER_ii_55_15, PER-ii, Bacteria

Not on your lists

27367..27567
DNA (201bp) protein (67aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_28
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(27568..27837)
DNA (270bp) protein (90aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_29
RLO_PER_ii_55_15, PER-ii, Bacteria

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27932..28276
DNA (345bp) protein (115aa)
type III restriction-modification enzyme, R/helicase subunit; K01156 type III restriction enzyme [EC:3.1.21.5] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
type III restriction-modification enzyme, R/helicase subunit; K01156 type III restriction enzyme [EC:3.1.21.5] id=5085173 bin=GWA2_OP11_43_14 species=GWA2_OP11 genus=GWA2_OP11 taxon_order=GWA2_OP11 taxon_class=GWA2_OP11 phylum=OP11 tax=GWA2_OP11_43_14 organism_group=OP11 (Microgenomates) organism_desc=GWA2_OP11_2
type III restriction-modification enzyme, R/helicase subunit
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_5143_30
RLO_PER_ii_55_15, PER-ii, Bacteria

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28224..28502
DNA (279bp) protein (93aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
Displaying items 1-30 of 56 in total

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