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RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_1
RLO_PER_ii_55_15, PER-ii, Bacteria

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3..1214
-----------------
DNA (1212bp)
protein (404aa)
dolichol-phosphate mannosyltransferase-membrane bound sugar transferase involved in LPS biosynthesis (EC:2.4.1.83)
type 11 methyltransferase Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
Probable dolichol-phosphate mannosyltransferase-putative membrane bound sugar transferase involved in LPS biosynthesis id=4015767 bin=GWC2_Chloroflexi_73_18 species=Thermomicrobium roseum genus=Thermomicrobium taxon_order=Thermomicrobiales taxon_class=Thermomicrobia phylum=Chloroflexi tax=GWC2_Chloroflexi_73_18 organism_group=Chloroflexi organism_desc=Good +
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_2
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(1313..2839)
-----------------
DNA (1527bp)
protein (509aa)
gt39A; glycosyl transferase family protein (EC:2.4.1.109) Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
hypothetical protein n=1 Tax=Pseudanabaena sp. PCC 6802 RepID=UPI00034B7369
hypothetical protein
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_3
RLO_PER_ii_55_15, PER-ii, Bacteria

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2871..3794
-----------------
DNA (924bp)
protein (308aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_4
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(3872..4807)
-----------------
DNA (936bp)
protein (312aa)
ATP synthase F1 subunit gamma (EC:3.6.3.14); K02115 F-type H+-transporting ATPase subunit gamma [EC:3.6.3.14] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
ATP synthase F1 subunit gamma (EC:3.6.3.14)
ATP synthase gamma chain n=1 Tax=uncultured bacterium RepID=K2BNQ1_9BACT
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_5
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(4835..6367)
-----------------
DNA (1533bp)
protein (511aa)
atpA; ATP synthase F0F1 subunit alpha (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
ttr:Tter_0065 ATP synthase F1, alpha subunit (EC:3.6.3.14); K02111 F-type H+-transporting ATPase subunit alpha [EC:3.6.3.14] id=73282 bin=ACD51 species=ACD51 genus=ACD51 taxon_order=ACD51 taxon_class=ACD51 phylum=PER tax=ACD51 organism_group=PER (Peregrinibacteria) organism_desc=PER
atpA; ATP synthase F0F1 subunit alpha (EC:3.6.3.14)
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_6
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(6354..6770)
-----------------
DNA (417bp)
protein (139aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_7
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(6767..7273)
-----------------
DNA (507bp)
protein (169aa)
atpF; F0F1-type ATP synthase subunit b; K02109 F-type H+-transporting ATPase subunit b [EC:3.6.3.14] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
ATP synthase subunit b n=1 Tax=uncultured bacterium RepID=K2AQD5_9BACT
atpF; F0F1-type ATP synthase subunit b
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_8
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(7357..7620)
-----------------
DNA (264bp)
protein (88aa)
atpE; ATP synthase subunit c; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
atpE; ATP synthase subunit c; K02110 F-type H+-transporting ATPase subunit c [EC:3.6.3.14] id=5802526 bin=PER_GWA2_38_35 species=PER_GWF2_38_31 genus=PER_GWF2_38_31 taxon_order=PER_GWF2_38_31 taxon_class=PER_GWF2_38_31 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
atpE; ATP synthase subunit c
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_9
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(7647..8450)
-----------------
DNA (804bp)
protein (268aa)
ATP synthase F0 subunit A; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
ATP synthase F0 subunit A; K02108 F-type H+-transporting ATPase subunit a [EC:3.6.3.14] id=73290 bin=ACD51 species=ACD51 genus=ACD51 taxon_order=ACD51 taxon_class=ACD51 phylum=PER tax=ACD51 organism_group=PER (Peregrinibacteria) organism_desc=PER
ATP synthase F0 subunit A
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_10
RLO_PER_ii_55_15, PER-ii, Bacteria

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8475..8708
-----------------
DNA (234bp)
protein (78aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_11
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(8697..8924)
-----------------
DNA (228bp)
protein (76aa)
seg Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
seg id=5802524 bin=PER_GWA2_38_35 species=PERA2_38_36 genus=PERA2_38_36 taxon_order=PERA2_38_36 taxon_class=PERA2_38_36 phylum=PER tax=PER_GWA2_38_35 organism_group=PER (Peregrinibacteria) organism_desc=This is the curated version (7 contigs can be represented as 5 scaffolds)
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_12
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(8989..9429)
-----------------
DNA (441bp)
protein (147aa)
ATP synthase F1 subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon [EC:3.6.3.14] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
hypothetical protein id=5801230 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
ATP synthase F1 subunit epsilon
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_13
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(9451..10821)
-----------------
DNA (1371bp)
protein (457aa)
ATP synthase subunit beta n=1 Tax=uncultured bacterium RepID=K2A728_9BACT
F0F1 ATP synthase subunit beta Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
F0F1 ATP synthase subunit beta
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_14
RLO_PER_ii_55_15, PER-ii, Bacteria

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10846..12285
-----------------
DNA (1440bp)
protein (480aa)
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
hypothetical protein id=5094154 bin=PER_GWF2_33_10 species=PER_GWF2_33_10 genus=PER_GWF2_33_10 taxon_order=PER_GWF2_33_10 taxon_class=PER_GWF2_33_10 phylum=PER tax=PER_GWF2_33_10 organism_group=PER (Peregrinibacteria) organism_desc=No RuBisCO in this genome
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_15
RLO_PER_ii_55_15, PER-ii, Bacteria

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12371..14029
-----------------
DNA (1659bp)
protein (553aa)
carboxy-terminal processing protease (EC:3.4.21.102); K03797 carboxyl-terminal processing protease [EC:3.4.21.102] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
Carboxyl-terminal protease n=1 Tax=uncultured bacterium RepID=K2AB10_9BACT
peptidase S41
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_16
RLO_PER_ii_55_15, PER-ii, Bacteria

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14223..17936
-----------------
DNA (3714bp)
protein (1238aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_17
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(17982..18107)
-----------------
DNA (126bp)
protein (42aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_18
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(18139..19080)
-----------------
DNA (942bp)
protein (314aa)
hypothetical protein ; K00757 uridine phosphorylase [EC:2.4.2.3] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
Uridine phosphorylase-like protein n=1 Tax=uncultured bacterium RepID=K2A6F5_9BACT
uridine phosphorylase
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_19
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(19082..19297)
-----------------
DNA (216bp)
protein (72aa)
Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_20
RLO_PER_ii_55_15, PER-ii, Bacteria

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comp(19307..19624)
-----------------
DNA (318bp)
protein (106aa)
LPS biosynthesis protein Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
RIFCSPLOWO2_01_FULL_OD1_54_110_rifcsplowo2_01_scaffold_12619_21
RLO_PER_ii_55_15, PER-ii, Bacteria

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19713..21719
-----------------
DNA (2007bp)
protein (669aa)
gyrB; DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] Tax=RIFCSPLOWO2_12_FULL_PER_ii_55_15_curated
DNA gyrase subunit B (EC:5.99.1.3); K02470 DNA gyrase subunit B [EC:5.99.1.3] id=5098200 bin=PER_GWF2_43_18 species=PER_GWF2_42_17 genus=PER_GWF2_42_17 taxon_order=PER_GWF2_42_17 taxon_class=PER_GWF2_42_17 phylum=PER tax=PER_GWF2_43_18 organism_group=PER (Peregrinibacteria)
DNA gyrase subunit B (EC:5.99.1.3)
Displaying 21 items

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