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RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..1581)
DNA (1581bp) protein (527aa)
Thiamine pyrophosphate enzyme-like TPP-binding protein id=1953829 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Marinobacter taxon_order=Alteromonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
thiamine pyrophosphate enzyme-like TPP-binding protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
thiamine pyrophosphate enzyme-like TPP-binding protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_2
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1629..2522)
DNA (894bp) protein (298aa)
6-phosphogluconate dehydrogenase, NAD-binding protein id=1953828 bin=GWD2_Deltaproteobacteria_55_8 species=Anabaena variabilis genus=Anabaena taxon_order=Nostocales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
6-phosphogluconate dehydrogenase Tax=GWD2_Deltaproteobacteria_55_8_curated
6-phosphogluconate dehydrogenase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_3
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2539..3567)
DNA (1029bp) protein (343aa)
Uncharacterized protein id=1953827 bin=GWD2_Deltaproteobacteria_55_8 species=Blastopirellula marina genus=Blastopirellula taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein CHP00730; K06966 Tax=GWD2_Deltaproteobacteria_55_8_curated
hypothetical protein CHP00730
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_4
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3683..3817
DNA (135bp) protein (45aa)
GAF sensor signal transduction histidine kinase id=1737062 bin=GWD2_Deltaproteobacteria_55_8 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
signal transduction histidine kinase Tax=GWD2_Deltaproteobacteria_55_8_curated
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_5
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3836..4222
DNA (387bp) protein (129aa)
Signal transduction histidine kinase Tax=GWD2_Deltaproteobacteria_55_8_curated
Two-component response regulator id=1737060 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Lyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Signal transduction histidine kinase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_trna_1
unknown

Not on your lists

comp(4372..4459)
DNA (88bp)
transferRNA
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_6
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4517..4921)
DNA (405bp) protein (135aa)
Putative uncharacterized protein id=1737058 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Lyngbya taxon_order=Oscillatoriales taxon_class=unknown phylum=Cyanobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein Tax=GWD2_Deltaproteobacteria_55_8_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_7
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5204..7327)
DNA (2124bp) protein (708aa)
vacuolar-type H(+)-translocating pyrophosphatase (EC:3.6.1.1); K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
K(+)-insensitive pyrophosphate-energized proton pump id=1737056 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Chloracidobacterium thermophilum genus=Candidatus Chloracidobacterium taxon_order=unknown taxon_class=unknown phylum=Acidobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Pyrophosphate-energized proton pump
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_8
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7368..8096)
DNA (729bp) protein (243aa)
Sec-independent protein translocase subunit TatC; K03118 sec-independent protein translocase protein TatC Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Sec-independent protein translocase, TatC subunit id=1737052 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfonatronospira thiodismutans genus=Desulfonatronospira taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Sec-independent protein translocase subunit TatC
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8215..8475)
DNA (261bp) protein (87aa)
Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_10
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8573..10663)
DNA (2091bp) protein (697aa)
penicillin-binding protein, 1A family; K05366 penicillin-binding protein 1A [EC:2.4.1.- 3.4.-.-] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Penicillin-binding protein, 1A family id=1746596 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfurivibrio alkaliphilus genus=Desulfurivibrio taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
penicillin-binding protein, 1A family
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_11
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


11127..11399
DNA (273bp) protein (91aa)
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20 Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
30S ribosomal protein S20 id=1746594 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpsT; 30S ribosomal protein S20
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_12
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11488..12099)
DNA (612bp) protein (204aa)
Lipoprotein, putative id=1746592 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfuromonas acetoxidans genus=Desulfuromonas taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(12183..14675)
DNA (2493bp) protein (831aa)
leuS; leucyl-tRNA synthetase (EC:6.1.1.4); K01869 leucyl-tRNA synthetase [EC:6.1.1.4] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
leuS; leucine--tRNA ligase (EC:6.1.1.4)
Leucine--tRNA ligase id=1746590 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_14
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14675..15100)
DNA (426bp) protein (142aa)
N utilization substance protein B homolog id=1746588 bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
NusB antitermination factor; K03625 N utilization substance protein B Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
NusB antitermination factor
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_15
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15236..15703)
DNA (468bp) protein (156aa)
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:6.3.3.-); K00794 6,7-dimethyl-8-ribityllumazine synthase [EC:2.5.1.78] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
ribH; 6,7-dimethyl-8-ribityllumazine synthase (EC:6.3.3.-)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Sulfurihydrogenibium azorense (strain Az-Fu1 / DSM 15241 / OCM 825) RepID=C1DXN5_SULAA
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_16
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15769..16992)
DNA (1224bp) protein (408aa)
GTP cyclohydrolase II (EC:3.5.4.25 4.1.2.-); K14652 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
GTP cyclohydrolase II (EC:3.5.4.25 4.1.2.-)
Riboflavin biosynthesis protein RibBA n=1 Tax=Syntrophus aciditrophicus (strain SB) RepID=Q2LQN0_SYNAS
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_17
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17029..17652)
DNA (624bp) protein (208aa)
riboflavin synthase subunit alpha (EC:2.5.1.9); K00793 riboflavin synthase [EC:2.5.1.9] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
riboflavin synthase subunit alpha (EC:2.5.1.9)
Riboflavin synthase, alpha subunit n=1 Tax=Geobacter sp. (strain M18) RepID=E8WHQ3_GEOS8
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_18
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17691..19532)
DNA (1842bp) protein (614aa)
Fumarate reductase flavoprotein subunit n=1 Tax=uncultured bacterium BLR7 RepID=C0INP0_9BACT
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_19
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19559..20317)
DNA (759bp) protein (253aa)
Putative uncharacterized protein n=1 Tax=Spirochaeta smaragdinae (strain DSM 11293 / JCM 15392 / SEBR 4228) RepID=E1RBK0_SPISS
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_20
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20504..20779)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Thiocystis violascens (strain ATCC 17096 / DSM 198 / 6111) RepID=I3Y9F1_THIV6
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_21
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20779..21042)
DNA (264bp) protein (88aa)
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Putative uncharacterized protein id=1821239 bin=GWB2_Nitrospirae_rel_47_37 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWB2_Nitrospirae_rel_47_37 organism_group=Nitrospirae organism_desc=Good + (but may not be Nitrospirae phylum)
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_22
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21255..21578)
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Solibacter usitatus (strain Ellin6076) RepID=Q01YW9_SOLUE
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_243_23
unknown

Not on your lists

comp(22062..22532)
DNA (471bp) protein (157aa)

This feature has no annotations

Displaying 24 items

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