ggKbase home page

RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822

Search features with annotation key words

Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_1
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..620
DNA (618bp) protein (206aa)
CmpX protein id=1881157 bin=GWD2_Deltaproteobacteria_55_8 species=Thiobacillus denitrificans genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
CmpX protein Tax=GWD2_Deltaproteobacteria_55_8_curated
CmpX protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

775..1719
DNA (945bp) protein (315aa)
mdh; malate dehydrogenase; K00024 malate dehydrogenase [EC:1.1.1.37] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Malate dehydrogenase id=1881155 bin=GWD2_Deltaproteobacteria_55_8 species=Sphingobium sp. SYK-6 genus=Sphingobium taxon_order=Sphingomonadales taxon_class=Alphaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
mdh; malate dehydrogenase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_3
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1812..2975
DNA (1164bp) protein (388aa)
sucC; succinyl-CoA synthetase subunit beta; K01903 succinyl-CoA synthetase beta subunit [EC:6.2.1.5] Tax=GWD2_Deltaproteobacteria_55_8_curated
sucC; succinyl-CoA ligase [ADP-forming] subunit beta (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta id=1881153 bin=GWD2_Deltaproteobacteria_55_8 species=Bacillus coagulans genus=Bacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_4
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3049..3927
DNA (879bp) protein (293aa)
succinyl-CoA synthetase subunit alpha; K01902 succinyl-CoA synthetase alpha subunit [EC:6.2.1.5] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
sucD; succinyl-CoA synthetase subunit alpha (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha id=1881151 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_5
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3920..4360
DNA (441bp) protein (147aa)
nucleoside-diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
nucleoside-diphosphate kinase (EC:2.7.4.6)
Nucleoside diphosphate kinase n=1 Tax=uncultured gamma proteobacterium RepID=H5S9K8_9GAMM
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_6
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4375..5466
DNA (1092bp) protein (364aa)
radical SAM domain-containing protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Dual-specificity RNA methyltransferase RlmN n=1 Tax=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) RepID=RLMN_SYNFM
radical SAM domain-containing protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_7
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5480..6391
DNA (912bp) protein (304aa)
radical SAM domain-containing protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
S-methyl-5'-thioadenosine phosphorylase n=2 Tax=Geobacter sulfurreducens RepID=MTAP_GEOSL
S-methyl-5'-thioadenosine phosphorylase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_8
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6405..7256
DNA (852bp) protein (284aa)
mtaP; methylthioadenosine phosphorylase; K00772 5'-methylthioadenosine phosphorylase [EC:2.4.2.28] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
S-methyl-5'-thioadenosine phosphorylase n=2 Tax=Geobacter metallireducens RepID=Q39S72_GEOMG
S-methyl-5'-thioadenosine phosphorylase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7349..8254
DNA (906bp) protein (302aa)
Adenosine kinase n=2 Tax=Geobacter sulfurreducens RepID=D7AHP6_GEOSK
carbohydrate kinase Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
adenosine kinase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_10
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8263..9216
DNA (954bp) protein (318aa)
glycosyl transferase Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
glycosyl transferase family protein
Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase id=2431052 bin=GWC2_Deltaproteobacteria_55_46 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWC2_Deltaproteobacteria_55_46 organism_group=Deltaproteobacteria organism_desc=Clade sibling to the Geobacter/Pelobacter
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_11
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9213..10517
DNA (1305bp) protein (435aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
UDP-glucose 6-dehydrogenase (EC:1.1.1.22)
UDP-glucose 6-dehydrogenase n=1 Tax=Stigmatella aurantiaca (strain DW4/3-1) RepID=Q09DA8_STIAD
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_12
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10510..11448
DNA (939bp) protein (313aa)
UDP-glucuronate decarboxylase (EC:4.1.1.35); K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=GWD2_Deltaproteobacteria_55_8_curated
UDP-glucuronate decarboxylase (EC:4.1.1.35)
NAD-dependent epimerase/dehydratase id=2076842 bin=GWD2_Deltaproteobacteria_55_8 species=Rhodothermus marinus genus=Rhodothermus taxon_order=Bacteroidetes Order II. Incertae sedis taxon_class=unknown phylum=Bacteroidetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11453..12475
DNA (1023bp) protein (341aa)
UDP-glucose 4-epimerase (EC:5.1.3.2) Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
UDP-glucose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase id=2076845 bin=GWD2_Deltaproteobacteria_55_8 species=Thermacetogenium phaeum genus=Thermacetogenium taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_14
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12439..14169
DNA (1731bp) protein (577aa)
GTP-binding protein LepA; K03596 GTP-binding protein LepA Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Elongation factor 4 id=2076849 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
lepA; GTP-binding protein LepA
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_15
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14199..14858
DNA (660bp) protein (220aa)
signal peptidase I (EC:3.4.21.89) Tax=GWD2_Deltaproteobacteria_55_8_curated
signal peptidase I (EC:3.4.21.89)
Signal peptidase I id=2076851 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfocapsa sulfexigens genus=Desulfocapsa taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_822_16
Saccharopolyspora erythraea, Saccharopolyspora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14873..15094)
DNA (222bp) protein (74aa)
CBS domain containing protein n=1 Tax=Saccharopolyspora erythraea (strain NRRL 23338) RepID=A4FCH3_SACEN
hypothetical protein
CBS domain containing protein {ECO:0000313|EMBL:CAM01748.1}; TaxID=405948 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharopolyspora.;" source="Saccharopolyspora eryth
Displaying 16 items

View Taxonomy