ggKbase home page

RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919_1
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..566)
DNA (564bp) protein (188aa)
ahcY; S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
S-adenosyl-L-homocysteine hydrolase (EC:3.3.1.1)
Adenosylhomocysteinase id=1759816 bin=GWD2_Deltaproteobacteria_55_8 species=planctomycete KSU-1 genus=unknown taxon_order=Planctomycetales taxon_class=Planctomycetia phylum=Planctomycetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919_2
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(598..1776)
DNA (1179bp) protein (393aa)
metK; S-adenosylmethionine synthetase; K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] Tax=GWD2_Deltaproteobacteria_55_8_curated
S-adenosylmethionine synthase id=1759815 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
metK-1; S-adenosylmethionine synthetase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919_3
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1937..2212)
DNA (276bp) protein (92aa)
Phosphotransferase system, phosphocarrier protein HPr id=1759814 bin=GWD2_Deltaproteobacteria_55_8 species=Thiocapsa marina genus=Thiocapsa taxon_order=Chromatiales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
HPrNtr; K11189 phosphocarrier protein Tax=GWD2_Deltaproteobacteria_55_8_curated
HPrNtr
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919_4
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2217..3083)
DNA (867bp) protein (289aa)
UPF0042 nucleotide-binding protein COCOR_07137 id=1759813 bin=GWD2_Deltaproteobacteria_55_8 species=Corallococcus coralloides genus=Corallococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein; K06958 UPF0042 nucleotide-binding protein Tax=GWD2_Deltaproteobacteria_55_8_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919_5
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3162..3623)
DNA (462bp) protein (154aa)
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN; K02806 PTS system, nitrogen regulatory IIA component [EC:2.7.1.69] Tax=GWD2_Deltaproteobacteria_55_8_curated
Putative PTS IIA-like nitrogen-regulatory protein PtsN id=1759812 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
PTS transporter subunit IIA-like nitrogen-regulatory protein PtsN
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919_6
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3620..3937)
DNA (318bp) protein (106aa)
Ribosomal subunit interface protein id=1759810 bin=GWD2_Deltaproteobacteria_55_8 species=delta proteobacterium NaphS2 genus=unknown taxon_order=unknown taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
sigma 54 modulation protein/ribosomal protein S30EA; K05808 putative sigma-54 modulation protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
pseudouridine synthase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919_7
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3960..5432)
DNA (1473bp) protein (491aa)
RNA polymerase sigma-54 factor id=1759808 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
rpoN; RNA polymerase, sigma 54/sigma 60 factor; K03092 RNA polymerase sigma-54 factor Tax=GWD2_Deltaproteobacteria_55_8_curated
rpoN; RNA polymerase sigma-54 factor RpoN
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919_8
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5435..6157)
DNA (723bp) protein (241aa)
ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] Tax=GWD2_Deltaproteobacteria_55_8_curated
ABC transporter ATP-binding protein id=1759806 bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ABC transporter ATP-binding protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919_9
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6154..6759)
DNA (606bp) protein (202aa)
Lipopolysaccharide transport periplasmic protein LptA id=1759804 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
OstA-like protein; K09774 lipopolysaccharide export system protein LptA Tax=GWD2_Deltaproteobacteria_55_8_curated
lptA; lipopolysaccharide ABC transporter periplasmic protein LptA
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919_10
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6734..7378)
DNA (645bp) protein (215aa)
id=1759803 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
id=1759803 Tax=GWD2_Deltaproteobacteria_55_8_curated
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919_11
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8017..9606)
DNA (1590bp) protein (530aa)
id=1759800 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
id=1759800 Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_919_12
unknown

Not on your lists

comp(9750..9899)
DNA (150bp) protein (50aa)

This feature has no annotations

Displaying 12 items

View Taxonomy