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RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_1
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2..820
DNA (819bp) protein (273aa)
site-specific recombinase, XerC; K03733 integrase/recombinase XerC Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Tyrosine recombinase XerC id=2114308 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
site-specific recombinase, XerC
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_2
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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897..1427
DNA (531bp) protein (177aa)
ATP-dependent protease peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ATP-dependent protease subunit HslV id=2114303 bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophobacter fumaroxidans genus=Syntrophobacter taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
ATP-dependent protease peptidase subunit
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_3
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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1432..2826
DNA (1395bp) protein (465aa)
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
ATP-dependent protease ATPase subunit HslU id=2114299 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hslU; ATP-dependent protease ATP-binding subunit HslU
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_4
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2839..3720
DNA (882bp) protein (294aa)
acetylglutamate kinase (EC:2.7.2.8); K00930 acetylglutamate kinase [EC:2.7.2.8] Tax=GWD2_Deltaproteobacteria_55_8_curated
acetylglutamate kinase (EC:2.7.2.8)
Acetylglutamate kinase id=2114295 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfurobacterium thermolithotrophum genus=Desulfurobacterium taxon_order=Aquificales taxon_class=Aquificae phylum=Aquificae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_5
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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3724..4914
DNA (1191bp) protein (397aa)
acetylornithine aminotransferase (EC:2.6.1.11); K00818 acetylornithine aminotransferase [EC:2.6.1.11] Tax=GWD2_Deltaproteobacteria_55_8_curated
acetylornithine aminotransferase (EC:2.6.1.11)
Acetylornithine aminotransferase id=2114293 bin=GWD2_Deltaproteobacteria_55_8 species=Syntrophus aciditrophicus genus=Syntrophus taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_6
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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4920..5891
DNA (972bp) protein (324aa)
argF; ornithine carbamoyltransferase (EC:2.1.3.3) Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
argF; ornithine carbamoyltransferase (EC:2.1.3.3)
Ornithine carbamoyltransferase n=1 Tax=Candidatus Methylomirabilis oxyfera RepID=D5MHR1_9BACT
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_7
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

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5888..7090
DNA (1203bp) protein (401aa)
argG; Argininosuccinate synthase (Citrulline--aspartate ligase) (EC:6.3.4.5) Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
argG; Argininosuccinate synthase (Citrulline--aspartate ligase) (EC:6.3.4.5)
Argininosuccinate synthase id=2114290 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_8
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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7198..8571
DNA (1374bp) protein (458aa)
argH; argininosuccinate lyase; K01755 argininosuccinate lyase [EC:4.3.2.1] Tax=GWD2_Deltaproteobacteria_55_8_curated
Argininosuccinate lyase id=2114288 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter carbinolicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
argH; argininosuccinate lyase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_9
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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8568..9071
DNA (504bp) protein (168aa)
Fibronectin, type III domain protein id=2114287 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
fibronectin I domain-containing protein Tax=GWD2_Deltaproteobacteria_55_8_curated
fibronectin I domain-containing protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_10
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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9071..10327
DNA (1257bp) protein (419aa)
diaminopimelate decarboxylase; K01586 diaminopimelate decarboxylase [EC:4.1.1.20] Tax=GWD2_Deltaproteobacteria_55_8_curated
Diaminopimelate decarboxylase id=2114286 bin=GWD2_Deltaproteobacteria_55_8 species=Thermodesulfatator indicus genus=Thermodesulfatator taxon_order=Thermodesulfobacteriales taxon_class=Thermodesulfobacteria phylum=Thermodesulfobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
diaminopimelate decarboxylase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_11
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

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10458..11279
DNA (822bp) protein (274aa)
dapF; diaminopimelate epimerase (EC:5.1.1.7); K01778 diaminopimelate epimerase [EC:5.1.1.7] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
dapF; diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase id=1871162 bin=GWB2_Proteobacteria_55_19 species=Thermodesulfovibrio yellowstonii genus=Thermodesulfovibrio taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWB2_Proteobacteria_55_19 organism_group=Proteobacteria organism_desc=Good
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_12
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11395..12267
DNA (873bp) protein (291aa)
dapA; dihydrodipicolinate synthase (EC:4.2.1.52); K01714 dihydrodipicolinate synthase [EC:4.2.1.52] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
dapA; dihydrodipicolinate synthase (EC:4.2.1.52) id=14429735 bin=bin3_NC10 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=bin3_NC10 organism_group=NC10
dapA; dihydrodipicolinate synthase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_1821_13
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12275..13075
DNA (801bp) protein (267aa)
dapB1; dihydrodipicolinate reductase (EC:1.3.1.26); K00215 dihydrodipicolinate reductase [EC:1.3.1.26] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
dapB; dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PAK6_9BACT
Displaying 13 items

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