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RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_1
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(288..1001)
DNA (714bp) protein (238aa)
OmpA/MotB domain protein id=1832201 bin=GWD2_Deltaproteobacteria_55_8 species=Echinicola vietnamensis genus=Echinicola taxon_order=Cytophagales taxon_class=Cytophagia phylum=Bacteroidetes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
outer membrane protein/peptidoglycan-associated (lipo)protein Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
outer membrane protein/peptidoglycan-associated (lipo)protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_2
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1110..1481)
DNA (372bp) protein (124aa)
Uncharacterized protein id=1832200 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Methylomirabilis oxyfera genus=Candidatus Methylomirabilis taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein Tax=GWD2_Deltaproteobacteria_55_8_curated
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_trna_1
unknown

Not on your lists

comp(1868..1941)
DNA (74bp)
transferRNA
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_3
RLO_Deltaproteobacteria_57_22, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1984..2646)
DNA (663bp) protein (221aa)
ribulose-5-phosphate 3-epimerase (EC:5.1.3.1); K01783 ribulose-phosphate 3-epimerase [EC:5.1.3.1] Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_57_22_curated
rpe; ribulose-phosphate 3-epimerase Rpe (EC:5.1.3.1)
Ribulose-phosphate 3-epimerase id=1832199 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Brevibacillus taxon_order=Bacillales taxon_class=Bacilli phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_4
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2649..4001)
DNA (1353bp) protein (451aa)
N utilization substance protein B; K03500 16S rRNA (cytosine967-C5)-methyltransferase [EC:2.1.1.176] Tax=GWD2_Deltaproteobacteria_55_8_curated
N utilization substance protein B-like protein id=1832198 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum kuznetsovii genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
N utilization substance protein B
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_5
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4001..4939)
DNA (939bp) protein (313aa)
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9); K00604 methionyl-tRNA formyltransferase [EC:2.1.2.9] Tax=GWD2_Deltaproteobacteria_55_8_curated
fmt; methionyl-tRNA formyltransferase (EC:2.1.2.9)
Methionyl-tRNA formyltransferase id=1832196 bin=GWD2_Deltaproteobacteria_55_8 species=Candidatus Nitrospira defluvii genus=Nitrospira taxon_order=Nitrospirales taxon_class=Nitrospira phylum=Nitrospirae tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_6
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4997..6442)
DNA (1446bp) protein (482aa)
hypothetical protein Tax=GWD2_Deltaproteobacteria_55_8_curated
Putative uncharacterized protein id=1832194 bin=GWD2_Deltaproteobacteria_55_8 species=Chlorobium ferrooxidans genus=Chlorobium taxon_order=Chlorobiales taxon_class=Chlorobia phylum=Chlorobi tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_7
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6402..7529)
DNA (1128bp) protein (376aa)
pyruvate carboxylase; K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14] Tax=GWD2_Deltaproteobacteria_55_8_curated
pyruvate carboxylase (EC:6.4.1.1)
Putative uncharacterized protein id=1832192 bin=GWD2_Deltaproteobacteria_55_8 species=Batrachochytrium dendrobatidis genus=Batrachochytrium taxon_order=Rhizophydiales taxon_class=Chytridiomycetes phylum=Chytridiomycota tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_8
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(7564..8061)
DNA (498bp) protein (166aa)
hypothetical protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Predicted protein id=1832190 bin=GWD2_Deltaproteobacteria_55_8 species=Nematostella vectensis genus=Nematostella taxon_order=Actiniaria taxon_class=Anthozoa phylum=Cnidaria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_9
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8077..8616)
DNA (540bp) protein (180aa)
peptide deformylase; K01462 peptide deformylase [EC:3.5.1.88] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Peptide deformylase id=1832188 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfobacca acetoxidans genus=Desulfobacca taxon_order=Syntrophobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
peptide deformylase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_10
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8630..10882)
DNA (2253bp) protein (751aa)
primosomal protein N'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-] Tax=GWD2_Deltaproteobacteria_55_8_curated
Replication restart DNA helicase PriA id=1832186 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter uraniireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
primosomal protein N'
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_11
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11257..11457
DNA (201bp) protein (67aa)
helix-turn-helix domain-containing protein Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Helix-turn-helix transcriptional regulator, XRE family id=1832184 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sp. genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
XRE family transcriptional regulator
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_12
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11454..12551
DNA (1098bp) protein (366aa)
Type IV pilus biogenesis ATPase PilM id=1832182 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
pilM; type IV pilus biogenesis protein PilM; K02662 type IV pilus assembly protein PilM Tax=GWD2_Deltaproteobacteria_55_8_curated
pilus assembly protein PilM
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_13
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12548..13165
DNA (618bp) protein (206aa)
Fimbrial assembly family protein id=1832180 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter metallireducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
fimbrial assembly; K02663 type IV pilus assembly protein PilN Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
pilN; type IV pilus biogenesis protein PilN
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_14
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13162..13788
DNA (627bp) protein (209aa)
pilO; type IV pilus biogenesis protein PilO; K02664 type IV pilus assembly protein PilO Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Type IV pilus biogenesis protein PilO id=1832178 bin=GWD2_Deltaproteobacteria_55_8 species=Geobacter sulfurreducens genus=Geobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
pilus assembly protein PilO
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_15
RLO_Deltaproteobacteria_60_16, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13794..14405
DNA (612bp) protein (204aa)
hypothetical protein; K02665 type IV pilus assembly protein PilP Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_16_curated
Putative uncharacterized protein id=1832175 bin=GWD2_Deltaproteobacteria_55_8 species=Anaeromyxobacter dehalogenans genus=Anaeromyxobacter taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
hypothetical protein
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_16
RLO_Deltaproteobacteria_60_19, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14427..16430
DNA (2004bp) protein (668aa)
type IV pilus secretin PilQ; K02666 type IV pilus assembly protein PilQ Tax=RIFCSPLOWO2_12_FULL_Deltaproteobacteria_60_19_curated
Type IV pilus biogenesis protein PilQ id=1832171 bin=GWD2_Deltaproteobacteria_55_8 species=Myxococcus sp. (contaminant ex DSM 436) genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
pilQ; type IV pilus secretin PilQ
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_17
RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16664..17860
DNA (1197bp) protein (399aa)
chorismate synthase; K01736 chorismate synthase [EC:4.2.3.5] Tax=RIFOXYA2_FULL_Deltaproteobacteria_55_11_curated
Chorismate synthase id=1832169 bin=GWD2_Deltaproteobacteria_55_8 species=Pelobacter propionicus genus=Pelobacter taxon_order=Desulfuromonadales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
aroC; chorismate synthase
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_18
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17906..18421
DNA (516bp) protein (172aa)
Shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71] Tax=GWD2_Deltaproteobacteria_55_8_curated
Shikimate kinase (EC:2.7.1.71)
Shikimate kinase id=1832166 bin=GWD2_Deltaproteobacteria_55_8 species=unknown genus=Thermoanaerobacter taxon_order=Thermoanaerobacterales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
RIFCSPLOWO2_02_CSX_56_12_rifcsplowo2_02_sub10_scaffold_373_19
GWD2_Deltaproteobacteria_55_8_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18479..18598
DNA (120bp) protein (40aa)
3-dehydroquinate synthase (EC:4.2.3.4); K01735 3-dehydroquinate synthase [EC:4.2.3.4] Tax=GWD2_Deltaproteobacteria_55_8_curated
3-dehydroquinate synthase id=1832128 bin=GWD2_Deltaproteobacteria_55_8 species=Desulfotomaculum nigrificans genus=Desulfotomaculum taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Deltaproteobacteria_55_8 organism_group=Deltaproteobacteria
Displaying 20 items

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